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[188460_s_at]

Description F56D1.5 /REP_DB=WormBase Gene ID /WP=CE28036 /GEN=daz-1 /TR=SW:Q10130 /GB=AAK68388.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 32      6grp_cgc > 69      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 412
1 2 3 4 range
A 98.4
(-3)
A 		276.6
(0.9)
P 		375.4
(3)
P 		335.9
(2.1)
P 		277
B 108.3
(-3)
A 		288.2
(-0.3)
P 		509.9
(3)
P 		247.4
(-0.9)
P 		402
C 164.6
(-3)
A 		354.3
(1.7)
P 		406.3
(3)
P 		376.6
(2.3)
P 		242
avr 123.8
(-3) 		306.4
(0.6) 		430.5
(3) 		320
(0.8) 		307

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1470
1 2 3 4 5 6 range
A 11.8
(-3)
A 		101.8
(-2.6)
A 		192.1
(-2.3)
P 		456.7
(-1.2)
P 		1022.3
(1.1)
P 		1478.3
(3)
P 		1467
B 19.4
(-3)
A 		51.1
(-2.8)
A 		184.1
(-2.2)
P 		360.8
(-1.3)
P 		847.5
(1.1)
P 		1241.6
(3)
P 		1222
C 8.4
(-3)
A 		123.8
(-2.4)
A 		228.8
(-1.8)
P 		279.3
(-1.6)
P 		1145
(3)
P 		1033.4
(2.4)
P 		1137
avr 13.2
(-3) 		92.2
(-2.6) 		201.7
(-2.1) 		365.6
(-1.3) 		1004.9
(1.8) 		1251.1
(3) 		1238
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 107
1 2 3 4 range
A 35.8
(-3)
A 		60
(-0.7)
P 		98.1
(3)
P 		49.2
(-1.7)
P 		62
B 34.5
(-3)
A 		71.2
(-0.4)
P 		118.1
(3)
P 		52.7
(-1.7)
P 		84
C 54.5
(-3)
A 		101.9
(0.3)
P 		141.6
(3)
P 		63.5
(-2.4)
P 		87
avr 41.6
(-3) 		77.7
(-0.2) 		119.3
(3) 		55.1
(-2) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 461
1 2 3 4 5 6 range
A 2.2
(-3)
A 		36.2
(-2.4)
A 		41.8
(-2.3)
P 		115.8
(-1.1)
P 		308.5
(2.1)
P 		359.9
(3)
P 		358
B 6.7
(-3)
A 		17
(-2.9)
A 		44.7
(-2.5)
P 		95.6
(-1.8)
P 		344.3
(1.4)
P 		463
(3)
P 		456
C 3.1
(-3)
A 		37.8
(-2.4)
A 		58.2
(-2.1)
P 		56.2
(-2.1)
P 		370.5
(3)
P 		345.9
(2.6)
P 		367
avr 4
(-3) 		30.3
(-2.6) 		48.2
(-2.3) 		89.2
(-1.7) 		341.1
(2.2) 		389.6
(3) 		386
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188460_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4785
Sequence Type Exemplar sequence
Representative Public ID F56D1.5 NCBI
Target Description F56D1.5 /REP_DB=WormBase Gene ID /WP=CE28036 /GEN=daz-1 /TR=SW:Q10130 /GB=AAK68388.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062635(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062635 NCBI Caenorhabditis elegans human DAZ (Deleted in Azoospermia) homolog family member (daz-1) (daz-1) mRNA, complete cds. 11/11 A 
SNAP00000013098 ENSEMBL cdna:SNAP chromosome:CEL140:II:5456304:5458114:1 11/11 None
GENEFINDER00000013104 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5456304:5458114:1 11/11 None
F56D1.7 ENSEMBL cdna:known chromosome:CEL140:II:5456275:5458575:1 gene:F56D1.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5453476-5458112(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol daz-1
Ensembl F56D1.7
Entrez Gene 173931 Entrez gene
SwissProt Q20870 EMBL-EBI
WormBase CE27175 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68389 Human daz (deleted in azoospermia) homolog protein 1 [Caenorhabditis elegans] ref|NP_495036.3| human DAZ (Deleted in Azoospermia) homolog family member (daz-1) [Caenorhabditis elegans] 0.0
blast Q20870 DAZ protein 1 dbj|BAA88577.1| DAZ-1 [Caenorhabditis elegans] 0.0
blast T30110 hypothetical protein F56D1.5 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 6.4E-18
Sequence
Target Sequence 
>C. ELEGANS:188460_S_AT
aattattctcaaggctacacccgtcctcatccatatcaacagtttgctcaatctggggtg
tacatgaacagccaaggaatgtaccattcgagttattcctacatgactcctccactggca
ccaggtcaatatccacaaatgatgtccgctccctattggcaacagcaacaacagcaccat
caaagtcatgcatacgctggctataatcccgcctacaacaactgggttggaccatctgga
gatatgaatcagttcaaacaaaatccgtcaaactacttctatcaaaattatccgggaaat
ttttcacaacaacacacgatgggaaacaatgaaaatacattctcccttcccctccaagct
ccacgccaaggcaagaagagccggaaaccatcggaatgtcaggataagaagacaaaaagc
ccaatcaaaggagctcgcactgagagaccatcgtcatcagcttcgactccagacgcgaaa
tatcagaagaaccacagatatccagttcatctttctcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTATTCTCAAGGCTACACCCGTC 161 175 2053 Antisense
GTCCTCATCCATATCAACAGTTTGC 221 477 2075 Antisense
GTACCATTCGAGTTATTCCTACATG 63 459 2133 Antisense
CCACTGGCACCAGGTCAATATCCAC 343 275 2164 Antisense
ATATCCACAAATGATGTCCGCTCCC 499 21 2181 Antisense
CATGCATACGCTGGCTATAATCCCG 230 211 2239 Antisense
TAATCCCGCCTACAACAACTGGGTT 225 635 2256 Antisense
AAATCCGTCAAACTACTTCTATCAA 630 117 2313 Antisense
TGAGAGACCATCGTCATCAGCTTCG 158 569 2493 Antisense
TCAGCTTCGACTCCAGACGCGAAAT 449 625 2509 Antisense
CAGATATCCAGTTCATCTTTCTCCA 195 207 2547 Antisense
Sequence Source Affymetrix Proprietary Database