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[188459_s_at] calponin

Description F28H1.2 /REP_DB=WormBase Gene ID /WP=CE09767 /TR=O01542 /GB=AAB52338.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=calponin
Cluster 6grp_highest_10_10 > 38      6grp_high1_10_10 > 72      4grp_highest_8_8 > 02      4grp_high_8_8 > 46      6grp_highest_nonorm > 47      6grp_total > 73      4grp_total > 49      6grp_highest_sub > 04      6grp_cgc > 76      6grp_high1_sub > 04      6grp_cgc_sub > 03_04      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5471
1 2 3 4 range
A 970.6
(-2.5)
P 		4721.9
(3)
P 		4706
(3)
P 		598.5
(-3)
P 		4123
B 718.5
(-3)
P 		5328.7
(2.4)
P 		5805.1
(3)
P 		815.6
(-2.9)
P 		5087
C 1023.1
(-2.8)
P 		6069.1
(3)
P 		5052.7
(1.8)
P 		891.8
(-3)
P 		5177
avr 904.1
(-2.8) 		5373.2
(3) 		5187.9
(2.8) 		768.6
(-3) 		4605

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8955
1 2 3 4 5 6 range
A 616.8
(-3)
P 		6495
(1.4)
P 		1309
(-2.5)
P 		8615.9
(3)
P 		691
(-2.9)
P 		5549.4
(0.7)
P 		7999
B 779.7
(-2)
P 		648.4
(-3)
P 		987.9
(-0.5)
P 		797
(-1.9)
P 		1425.5
(2.7)
P 		1465.2
(3)
P 		817
C 7009
(1.3)
P 		589.7
(-3)
P 		9544.7
(3)
P 		945
(-2.8)
P 		9196.8
(2.8)
P 		2511.1
(-1.7)
P 		8955
avr 2801.8
(-2) 		2577.7
(-3) 		3947.2
(3) 		3452.6
(0.8) 		3771.1
(2.2) 		3175.2
(-0.4) 		1370
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1673
1 2 3 4 range
A 353.4
(-1.6)
P 		1025
(1.9)
P 		1230.2
(3)
P 		87.6
(-3)
P 		1143
B 229.1
(-2.7)
P 		1316.1
(2.9)
P 		1345.2
(3)
P 		173.8
(-3)
P 		1171
C 338.7
(-2.3)
P 		1744.9
(2.9)
P 		1761
(3)
P 		150.4
(-3)
P 		1611
avr 307.1
(-2.2) 		1362
(2.6) 		1445.5
(3) 		137.3
(-3) 		1308

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2862
1 2 3 4 5 6 range
A 113.7
(-3)
P 		2309.9
(3)
P 		285.1
(-2.5)
P 		2185.2
(2.7)
P 		208.5
(-2.7)
P 		1351.1
(0.4)
P 		2196
B 271.3
(-2)
P 		215.8
(-2.9)
P 		239.9
(-2.5)
P 		211.1
(-3)
P 		579.2
(3)
P 		546.4
(2.5)
P 		368
C 2597.9
(2.2)
P 		179.9
(-3)
P 		2429.3
(1.8)
P 		190
(-3)
P 		2976
(3)
P 		840.6
(-1.6)
P 		2796
avr 994.3
(-1) 		901.9
(-2.4) 		984.8
(-1.1) 		862.1
(-3) 		1254.6
(3) 		912.7
(-2.2) 		393
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188459_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.180
Sequence Type Exemplar sequence
Representative Public ID F28H1.2 NCBI
Target Description F28H1.2 /REP_DB=WormBase Gene ID /WP=CE09767 /TR=O01542 /GB=AAB52338.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=calponin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058881(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058881 NCBI Caenorhabditis elegans F28H1.2 (calponin) mRNA, complete cds. 11/11 None
SNAP00000015488 ENSEMBL cdna:SNAP chromosome:CEL140:I:3987980:3988556:1 11/11 None
GENEFINDER00000015492 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3987980:3988556:1 11/11 None
F28H1.2 ENSEMBL cdna:known chromosome:CEL140:I:3987893:3988698:1 gene:F28H1.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3987979-3988556(+) 100.0 100.0
Public Domain and Genome References
Gene Title calponin
Gene Symbol cpn-3
Ensembl F28H1.2
Entrez Gene 171986 Entrez gene
SwissProt O01542 EMBL-EBI
WormBase CE09767 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_491282 F28H1.2 [Caenorhabditis elegans] gb|AAB52338.1| Calponin protein 3 [Caenorhabditis elegans] 2.0E-75
blast CAE66734 Hypothetical protein CBG12084 [Caenorhabditis briggsae] 1.0E-72
blast CAE73036 Hypothetical protein CBG20405 [Caenorhabditis briggsae] 4.0E-34
Protein Domains
Database ID Description E-Value
Pfam IPR001715 EMBL-EBI Calponin-like actin-binding 9.0E-20
Sequence
Target Sequence 
>C. ELEGANS:188459_S_AT
attcgctgtccgccaaaagcaagactccaagttcatcgacaaggaggccactcttcttct
cgaatggatcaagaagctctccggtgagaacatctctacatccggagaacgcgacaactt
ccacaaccttctcaaggacggaacccttctttgcaaagccgccaacggaatcgaggccgg
atcaatcaagaaggtgcaaaagccgatctcgaccttcgcatgcatggagaacatcaacgc
attcgtcgagttcgccaagaagcagggagtaccaaatgaggagacattccagtctgtgga
gctcgtcgaaggacgcgatctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCGCTGTCCGCCAAAAGCAAGAC 583 7 45 Antisense
GCAAGACTCCAAGTTCATCGACAAG 670 319 63 Antisense
ATCGACAAGGAGGCCACTCTTCTTC 338 33 79 Antisense
GCCACTCTTCTTCTCGAATGGATCA 470 279 91 Antisense
GAAGCTCTCCGGTGAGAACATCTCT 299 343 117 Antisense
ATCCGGAGAACGCGACAACTTCCAC 85 37 144 Antisense
CTCAAGGACGGAACCCTTCTTTGCA 645 225 175 Antisense
GAAGGTGCAAAAGCCGATCTCGACC 381 333 234 Antisense
ATCTCGACCTTCGCATGCATGGAGA 179 33 250 Antisense
GACATTCCAGTCTGTGGAGCTCGTC 527 369 327 Antisense
GGAGCTCGTCGAAGGACGCGATCTT 122 521 342 Antisense
Sequence Source Affymetrix Proprietary Database