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[188458_s_at]

Description C02H7.3 /REP_DB=WormBase Gene ID /WP=CE16806 /GEN=aex-3 /TR=SW:O02626 /GB=AAC47926.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 27      4grp_high_8_8 > 10      6grp_total > 27      4grp_total > 22      6grp_cgc > 05      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 259
1 2 3 4 range
A 278.3
(3)
P 		121.1
(-2.5)
A 		107.2
(-3)
A 		242.1
(1.7)
M 		171
B 206.2
(2.5)
P 		134
(0.1)
P 		38.6
(-3)
A 		220.6
(3)
P 		182
C 265.6
(2)
P 		133
(-2.3)
A 		110.2
(-3)
P 		298
(3)
P 		188
avr 250
(2.9) 		129.4
(-1.4) 		85.3
(-3) 		253.6
(3) 		168

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 280
1 2 3 4 5 6 range
A 175.2
(2)
P 		192.2
(3)
P 		101.8
(-2.2)
A 		86.9
(-3)
A 		124.7
(-0.8)
A 		126.3
(-0.8)
P 		105
B 262.3
(3)
P 		158.5
(-0.3)
P 		74.2
(-3)
A 		97.1
(-2.3)
P 		85.2
(-2.6)
P 		128.9
(-1.3)
P 		188
C 335.5
(3)
P 		195
(-0)
P 		102.4
(-2)
P 		56
(-3)
A 		81.7
(-2.4)
A 		162.9
(-0.7)
P 		280
avr 257.7
(3) 		181.9
(0.4) 		92.8
(-2.6) 		80
(-3) 		97.2
(-2.4) 		139.4
(-1) 		178
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 101.3
(3)
P 		26.3
(-3)
A 		28
(-2.9)
A 		35.4
(-2.3)
M 		75
B 65.8
(3)
P 		33.1
(-0.4)
P 		8.9
(-3)
A 		47
(1)
P 		57
C 87.9
(3)
P 		38.2
(-3)
A 		38.4
(-3)
P 		50.2
(-1.6)
P 		50
avr 85
(3) 		32.5
(-2.3) 		25.1
(-3) 		44.2
(-1.1) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 113
1 2 3 4 5 6 range
A 32.3
(-1.7)
P 		68.4
(3)
P 		22.2
(-3)
A 		22.1
(-3)
A 		37.6
(-1)
A 		30.7
(-1.9)
P 		46
B 91.3
(3)
P 		52.8
(-0.2)
P 		18
(-3)
A 		25.7
(-2.4)
P 		34.6
(-1.6)
P 		48.1
(-0.5)
P 		73
C 124.4
(3)
P 		59.5
(-0.4)
P 		26.1
(-2.2)
P 		11.3
(-3)
A 		26.4
(-2.2)
A 		54.5
(-0.7)
P 		113
avr 82.7
(3) 		60.2
(0.9) 		22.1
(-2.8) 		19.7
(-3) 		32.9
(-1.7) 		44.4
(-0.6) 		63
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188458_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18366
Sequence Type Exemplar sequence
Representative Public ID C02H7.3 NCBI
Target Description C02H7.3 /REP_DB=WormBase Gene ID /WP=CE16806 /GEN=aex-3 /TR=SW:O02626 /GB=AAC47926.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171618(11), NM_001029171(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171618 NCBI Caenorhabditis elegans Aboc, EXpulsion defective family member (aex-3) (aex-3) mRNA, complete cds. 11/11 A 
NM_001029171 NCBI Caenorhabditis elegans Aboc, EXpulsion defective family member (aex-3) (aex-3) mRNA, complete cds. 10/11 None
GENEFINDER00000036785 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:751523:758448:-1 11/11 None
C02H7.3a ENSEMBL cdna:known chromosome:CEL140:X:751201:759731:-1 gene:C02H7.3 11/11 A 
C02H7.3b ENSEMBL cdna:known chromosome:CEL140:X:752880:759700:-1 gene:C02H7.3 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000036781 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:751522-759700(-) 100.0 100.0
Public Domain and Genome References
Ensembl C02H7.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC47926 Aboc, expulsion defective protein 3, isoform a [Caenorhabditis elegans] ref|NP_741710.1| Aboc, EXpulsion defective family member (aex-3) [Caenorhabditis elegans] gb|AAB52421.1| regulator of presynaptic activity [Caenorhabditis elegans] sp|O02626|AEX3_CAEEL Regulator of presynaptic activity aex-3 0.0
blast AAM51509 Aboc, expulsion defective protein 3, isoform b [Caenorhabditis elegans] ref|NP_001024342.1| Aboc, EXpulsion defective family member (aex-3) [Caenorhabditis elegans] 0.0
blast CAE63627 Hypothetical protein CBG08121 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR005112 EMBL-EBI dDENN domain 2.2E-29
Pfam IPR001194 EMBL-EBI DENN (AEX-3) domain 1.4E-102
Pfam IPR005113 EMBL-EBI uDENN domain 3.8E-48
Pfam IPR005112 EMBL-EBI dDENN domain 2.2E-29
Pfam IPR001194 EMBL-EBI DENN (AEX-3) domain 8.8E-65
Sequence
Target Sequence 
>C. ELEGANS:188458_S_AT
aatcgttcacagtgtgtcctggacaaagctcagatggtcagatgatgtttatggaggttt
gcgatgatgcagttgtcctccgatcaataaccggtgcggcaactgagcgttggtggtacg
agcgtcttgtgaatatcacatactcgccgaaaacaaagattctttgtctttggagacgac
atgacgataaagtgcatatgcataaattccacacgaaaaagtgccgagaactttatcaat
gtatgaaggcagcaatggaaagagcggctgcacgaggaaaagtgaatgttgagggaagag
ccctgggaggagagtttccagttcatgacactgaaactaatcaaggcggattgctacaag
tacgttgtgacggggttgctgttatttttgcccacaaccaaatatttattgggctgtcta
atattaagaaatgcaacacatttggcgggaatgtttttcttttggaagaatttgaccgca
aaaaaggagaaattattcagagacgctacttttcacaaatggcagatcagatttgctatg
cagttctgtgcgtcttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCGTTCACAGTGTGTCCTGGACA 550 167 3641 Antisense
TTGCGATGATGCAGTTGTCCTCCGA 268 701 3699 Antisense
TGTCCTCCGATCAATAACCGGTGCG 525 555 3714 Antisense
TAACCGGTGCGGCAACTGAGCGTTG 524 609 3728 Antisense
GAGCGTTGGTGGTACGAGCGTCTTG 224 387 3745 Antisense
GTGAATATCACATACTCGCCGAAAA 469 481 3769 Antisense
AGGAGAGTTTCCAGTTCATGACACT 75 57 3948 Antisense
ACGTTGTGACGGGGTTGCTGTTATT 387 93 4002 Antisense
TTGCTGTTATTTTTGCCCACAACCA 532 701 4016 Antisense
GAGACGCTACTTTTCACAAATGGCA 243 393 4140 Antisense
TTGCTATGCAGTTCTGTGCGTCTTC 593 703 4173 Antisense
Sequence Source Affymetrix Proprietary Database