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[188451_s_at] cuticulin

Description F22B5.3 /REP_DB=WormBase Gene ID /WP=CE02198 /TR=Q19707 /GB=CAA90355.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=cuticulin
Cluster 6grp_total > 59      4grp_total > 12      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 332
1 2 3 4 range
A 154.6
(-0.3)
P 		104.8
(-1.5)
A 		44.9
(-3)
A 		292.5
(3)
P 		248
B 155.8
(0.1)
P 		119.2
(-0.6)
A 		2.6
(-3)
A 		296.9
(3)
P 		294
C 126.2
(-1)
P 		24.6
(-3)
A 		66.8
(-2.2)
A 		335
(3)
P 		310
avr 145.5
(-0.6) 		82.9
(-2) 		38.1
(-3) 		308.1
(3) 		270

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 734
1 2 3 4 5 6 range
A 558.2
(1.5)
P 		47.5
(-2.8)
A 		22.5
(-3)
A 		117.1
(-2.2)
A 		225.6
(-1.3)
P 		741.8
(3)
P 		719
B 531.5
(1.1)
P 		44.3
(-3)
A 		81.1
(-2.7)
A 		146.3
(-2.1)
P 		234.7
(-1.4)
P 		756.5
(3)
P 		712
C 495.9
(0.8)
P 		95.5
(-2.6)
A 		54.5
(-3)
A 		108.2
(-2.5)
M 		256.7
(-1.3)
P 		749.9
(3)
P 		695
avr 528.5
(1.1) 		62.4
(-2.9) 		52.7
(-3) 		123.9
(-2.4) 		239
(-1.4) 		749.4
(3) 		697
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 56.3
(3)
P 		22.7
(-1.5)
A 		11.7
(-3)
A 		42.8
(1.2)
P 		45
B 49.7
(1.7)
P 		29.4
(-0.2)
A 		0.6
(-3)
A 		63.3
(3)
P 		63
C 41.8
(1.2)
P 		7.1
(-3)
A 		23.3
(-1)
A 		56.5
(3)
P 		49
avr 49.3
(2.3) 		19.7
(-1.9) 		11.9
(-3) 		54.2
(3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 277
1 2 3 4 5 6 range
A 102.9
(0.3)
P 		16.9
(-2.6)
A 		4.9
(-3)
A 		29.7
(-2.2)
A 		68.1
(-0.8)
P 		180.6
(3)
P 		176
B 184.9
(0.8)
P 		14.8
(-3)
A 		19.7
(-2.9)
A 		38.7
(-2.5)
P 		95.3
(-1.2)
P 		282.1
(3)
P 		267
C 183.8
(1.3)
P 		29.1
(-2.6)
A 		13.9
(-3)
A 		21.8
(-2.8)
M 		83.1
(-1.2)
P 		251
(3)
P 		237
avr 157.2
(0.8) 		20.3
(-2.8) 		12.8
(-3) 		30.1
(-2.5) 		82.2
(-1.2) 		237.9
(3) 		225
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188451_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3054
Sequence Type Exemplar sequence
Representative Public ID F22B5.3 NCBI
Target Description F22B5.3 /REP_DB=WormBase Gene ID /WP=CE02198 /TR=Q19707 /GB=CAA90355.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=cuticulin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063379(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063379 NCBI Caenorhabditis elegans F22B5.3 (cuticulin) mRNA, complete cds. 11/11 None
SNAP00000010403 ENSEMBL cdna:SNAP chromosome:CEL140:II:8445192:8446752:-1 11/11 None
GENEFINDER00000010414 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8445192:8446752:-1 11/11 None
F22B5.3 ENSEMBL cdna:known chromosome:CEL140:II:8445091:8446753:-1 gene:F22B5.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8445188-8446749(-) 100.0 100.0
Public Domain and Genome References
Gene Title cuticulin
Ensembl F22B5.3
Entrez Gene 174347 Entrez gene
SwissProt Q19707 EMBL-EBI
WormBase CE02198 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90355 Hypothetical protein F22B5.3 [Caenorhabditis elegans] ref|NP_495780.1| F22B5.3 [Caenorhabditis elegans] 0.0
blast CAE57642 Hypothetical protein CBG00627 [Caenorhabditis briggsae] 0.0
blast CAA88934 Hypothetical protein C47G2.1 [Caenorhabditis elegans] ref|NP_496410.1| C47G2.1 [Caenorhabditis elegans] sp|Q03755|CUT1_CAEEL Cuticlin-1 precursor 1.0E-147
Protein Domains
Database ID Description E-Value
Pfam IPR001507 EMBL-EBI Endoglin/CD105 antigen 2.1E-35
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495780.1 1 353-375
F22B5.3 1 353-375
SNAP00000010403 1 353-375
GENEFINDER00000010414 1 353-375
Sequence
Target Sequence 
>C. ELEGANS:188451_S_AT
gaaaccgttgatactttctgcgctgtcgttcactcttgcactgttgatgatggaaatggt
gataccgtgcaaattttggatgagaacggttgtgctcttgataagttcttgctcaacaat
ttggaatatccaactgatttgatggctggacaagaggctcacgtctacaaatacgctgat
cgttctcaacttttctatcaatgccagatttccattactgttaaggaaccaaatgaggag
tgtgctcgcccaacgtgctctgagccacaaggatttggagcagttaagcaagctaaccaa
actgctcagttcttcagagttttgaagaagagatccgctccagtaatggagaatattctt
gatgtccgtgctgagctcacaactttggaagttttggaaggaaatctcccatcttctctc
acacaagctcaagctctcgtagcttcgagagaaatcggagaagattcattccgacaagaa
ttgtgtatcagctctttccatatctccgttgtcactgtcttccttggtcttaccgttttc
gtggctattttcatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAACCGTTGATACTTTCTGCGCTG 170 359 568 Antisense
GGCTGGACAAGAGGCTCACGTCTAC 149 541 711 Antisense
ATACGCTGATCGTTCTCAACTTTTC 292 23 738 Antisense
CAAATGAGGAGTGTGCTCGCCCAAC 612 191 797 Antisense
CCCAACGTGCTCTGAGCCACAAGGA 301 257 816 Antisense
GCAAGCTAACCAAACTGCTCAGTTC 313 321 855 Antisense
GAATATTCTTGATGTCCGTGCTGAG 35 327 918 Antisense
TCCGTGCTGAGCTCACAACTTTGGA 138 595 932 Antisense
AAGCTCAAGCTCTCGTAGCTTCGAG 270 151 992 Antisense
ATTGTGTATCAGCTCTTTCCATATC 675 3 1047 Antisense
TACCGTTTTCGTGGCTATTTTCATC 457 649 1098 Antisense
Sequence Source Affymetrix Proprietary Database