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[188450_at]

Description ZK328.6 /REP_DB=WormBase Gene ID /WP=CE05071 /GEN=tbx-7 /TR=SW:Q23467 /GB=AAA91252.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 71      4grp_total > 32      6grp_cgc > 85      6grp_cgc_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 135
1 2 3 4 range
A 44
(-3)
A 		70.2
(-0.8)
A 		116.7
(3)
P 		83.5
(0.3)
A 		73
B 63.5
(0)
A 		65.7
(0.2)
A 		99.8
(3)
P 		26
(-3)
A 		74
C 43.9
(-3)
A 		46.2
(-2.9)
A 		56.7
(-2.3)
P 		160.5
(3)
P 		117
avr 50.5
(-3) 		60.7
(-1.5) 		91.1
(3) 		90
(2.8) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 39
(-0.9)
A 		11.3
(-3)
A 		90.3
(3)
P 		52.6
(0.1)
M 		65.4
(1.1)
P 		34.9
(-1.2)
A 		79
B 23
(-2.8)
A 		20.7
(-3)
A 		50.5
(-0.2)
A 		83.8
(3)
P 		28.3
(-2.3)
A 		23.8
(-2.7)
A 		63
C 13.5
(-3)
A 		51.1
(0.3)
P 		49.6
(0.1)
P 		82.6
(3)
P 		52.4
(0.4)
A 		26
(-1.9)
M 		69
avr 25.2
(-3) 		27.7
(-2.7) 		63.5
(1.8) 		73
(3) 		48.7
(-0.1) 		28.2
(-2.6) 		48
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 16
(-1.8)
A 		15.2
(-2)
A 		30.5
(3)
P 		12.2
(-3)
A 		18
B 20.2
(2)
A 		16.2
(0.6)
A 		23.1
(3)
P 		5.5
(-3)
A 		18
C 14.5
(-2.5)
A 		13.3
(-3)
A 		19.8
(-0.2)
P 		27.1
(3)
P 		14
avr 16.9
(-1.8) 		14.9
(-3) 		24.5
(3) 		14.9
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 7.2
(-1.8)
A 		4
(-3)
A 		19.7
(3)
P 		13.3
(0.6)
M 		19.7
(3)
P 		8.5
(-1.3)
A 		16
B 8
(-2.6)
A 		6.9
(-3)
A 		12.3
(-0.9)
A 		22.2
(3)
P 		11.5
(-1.2)
A 		8.9
(-2.2)
A 		15
C 5
(-3)
A 		15.6
(2.3)
P 		12.6
(0.8)
P 		16.6
(2.8)
P 		17
(3)
A 		8.7
(-1.2)
M 		12
avr 6.7
(-3) 		8.8
(-1.8) 		14.9
(1.6) 		17.4
(3) 		16.1
(2.3) 		8.7
(-1.9) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188450_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6142
Sequence Type Exemplar sequence
Representative Public ID ZK328.6 NCBI
Target Description ZK328.6 /REP_DB=WormBase Gene ID /WP=CE05071 /GEN=tbx-7 /TR=SW:Q23467 /GB=AAA91252.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065912(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065912 NCBI Caenorhabditis elegans T BoX family member (tbx-7) (tbx-7) mRNA, complete cds. 11/11 None
SNAP00000038060 ENSEMBL cdna:SNAP chromosome:CEL140:III:6025032:6026693:-1 11/11 None
GENEFINDER00000038065 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6025032:6030420:-1 11/11 None
ZK328.8 ENSEMBL cdna:known chromosome:CEL140:III:6025032:6026777:-1 gene:ZK328.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6025030-6030419(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol tbx-7
Ensembl ZK328.8
Entrez Gene 260030 Entrez gene
SwissProt Q95PX3 EMBL-EBI
WormBase CE29639 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAL11479 T box family protein 7 [Caenorhabditis elegans] ref|NP_498313.1| T BoX family member (tbx-7) [Caenorhabditis elegans] sp|Q95PX3|TBX7_CAEEL Putative T-box protein 0.0
blast T29011 hypothetical protein ZK328.6 - Caenorhabditis elegans 0.0
blast AAL11478 Hypothetical protein ZK328.6 [Caenorhabditis elegans] ref|NP_498314.1| ZK328.6 [Caenorhabditis elegans] sp|Q8TA81|YSYF_CAEEL Hypothetical F-box protein ZK328.6 1.0E-178
blast CAE64334 Hypothetical protein CBG09017 [Caenorhabditis briggsae] 1.0E-168
blast AAL11479 T box family protein 7 [Caenorhabditis elegans] ref|NP_498313.1| T BoX family member (tbx-7) [Caenorhabditis elegans] sp|Q95PX3|TBX7_CAEEL Putative T-box protein 1.0E-165
blast T29011 hypothetical protein ZK328.6 - Caenorhabditis elegans 1.0E-164
blast C56530 Ce-tbx-7 protein - Caenorhabditis elegans (fragment) 1.0E-102
Protein Domains
Database ID Description E-Value
Pfam IPR001699 EMBL-EBI Transcription factor, T-box 5.8E-99
Pfam IPR001699 EMBL-EBI Transcription factor, T-box 5.8E-99
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 5.4E-6
Pfam IPR001699 EMBL-EBI Transcription factor, T-box 5.8E-99
Sequence
Target Sequence 
>C. ELEGANS:188450_AT
tggagaacatcatccacttccgacatgttttgtacatccacaatcacctagaagtggtga
atggtggatgacagatggagttgacttcaaaatggctaaactttcaaataatccatttaa
taatgatggtcatattgtactcaattcaatgcaccgttataatccccggtttcacatagt
tcgagctgatagttcgggtcaaccaattctagcatctctcaagacattctcgttcaagga
aaccgagttcatcgcagtgactgcttatcagaacgatgtggtaacgaaatgcaaaatcga
taacaatccttttgcaaaaggtttccgaaacattgatacagtaagaaaacggaagatgaa
ccaaattataagcactcctcctgcatccgaagacgaagaaccagaagttaaaagaacaaa
atctgaaatagaagctgttatgttttctgatccaaaagtaccacaaatgtctcttcagtt
gatttctcagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGAGAACATCATCCACTTCCGACA 324 549 1407 Antisense
TGTACATCCACAATCACCTAGAAGT 340 559 1437 Antisense
ATTCAATGCACCGTTATAATCCCCG 5 13 1550 Antisense
TAATCCCCGGTTTCACATAGTTCGA 670 627 1566 Antisense
TCGAGCTGATAGTTCGGGTCAACCA 100 603 1587 Antisense
TCAACCAATTCTAGCATCTCTCAAG 573 631 1605 Antisense
GCATCTCTCAAGACATTCTCGTTCA 685 309 1618 Antisense
AAACCGAGTTCATCGCAGTGACTGC 617 125 1646 Antisense
GAACCAAATTATAAGCACTCCTCCT 515 343 1764 Antisense
CTCCTCCTGCATCCGAAGACGAAGA 74 235 1781 Antisense
ATGTCTCTTCAGTTGATTTCTCAGT 13 49 1873 Antisense
Sequence Source Affymetrix Proprietary Database