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[188446_at] chitinase

Description R09D1.1 /REP_DB=WormBase Gene ID /WP=CE03542 /TR=Q21857 /GB=CAA93861.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=chitinase
Cluster 6grp_total > 77      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 265
1 2 3 4 range
A 15.2
(-2.8)
A 		24
(-2.6)
A 		8.1
(-3)
A 		225.4
(3)
P 		217
B 7.5
(-3)
A 		13.1
(-2.9)
A 		19.1
(-2.7)
A 		245.9
(3)
P 		238
C 24.9
(-2.7)
A 		27.2
(-2.7)
P 		13.8
(-3)
A 		272.4
(3)
P 		259
avr 15.9
(-2.9) 		21.4
(-2.8) 		13.7
(-3) 		247.9
(3) 		234

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 187
1 2 3 4 5 6 range
A 2.9
(-3)
A 		10.4
(-2.7)
A 		8
(-2.8)
A 		37
(-1.6)
P 		41.8
(-1.4)
P 		151.5
(3)
P 		149
B 17
(-2.5)
A 		1.8
(-3)
A 		20.7
(-2.4)
A 		3
(-3)
A 		51
(-1.4)
P 		188.6
(3)
P 		187
C 19.2
(-2.4)
M 		18.2
(-2.4)
P 		2.8
(-3)
A 		3.7
(-3)
A 		61.4
(-0.7)
P 		156.1
(3)
P 		153
avr 13
(-2.9) 		10.1
(-3) 		10.5
(-3) 		14.6
(-2.8) 		51.4
(-1.4) 		165.4
(3) 		155
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 5.5
(-2.3)
A 		5.2
(-2.4)
A 		2.1
(-3)
A 		33
(3)
P 		31
B 2.4
(-3)
A 		3.2
(-2.9)
A 		4.4
(-2.8)
A 		52.4
(3)
P 		50
C 8.2
(-2.5)
A 		7.8
(-2.6)
P 		4.8
(-3)
A 		45.9
(3)
P 		41
avr 5.4
(-2.8) 		5.4
(-2.8) 		3.8
(-3) 		43.8
(3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 0.5
(-3)
A 		3.7
(-2.5)
A 		1.7
(-2.8)
A 		9.4
(-1.5)
P 		12.6
(-1)
P 		36.9
(3)
P 		36
B 5.9
(-2.5)
A 		0.6
(-3)
A 		5
(-2.6)
A 		0.8
(-3)
A 		20.7
(-1.3)
P 		70.3
(3)
P 		70
C 7.1
(-2.3)
M 		5.6
(-2.4)
P 		0.7
(-3)
A 		0.7
(-3)
A 		19.9
(-0.8)
P 		52.2
(3)
P 		52
avr 4.5
(-2.8) 		3.3
(-2.9) 		2.5
(-3) 		3.6
(-2.9) 		17.7
(-1.2) 		53.1
(3) 		51
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188446_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4004
Sequence Type Exemplar sequence
Representative Public ID R09D1.1 NCBI
Target Description R09D1.1 /REP_DB=WormBase Gene ID /WP=CE03542 /TR=Q21857 /GB=CAA93861.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=chitinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063620(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063620 NCBI Caenorhabditis elegans R09D1.1 (chitinase) mRNA, complete cds. 11/11 None
SNAP00000010204 ENSEMBL cdna:SNAP chromosome:CEL140:II:9438520:9443531:-1 11/11 None
GENEFINDER00000010213 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9438520:9443531:-1 9/11 None
R09D1.1 ENSEMBL cdna:known chromosome:CEL140:II:9442077:9443531:-1 gene:R09D1.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9442073-9443528(-) 98.54 100.0
Public Domain and Genome References
Gene Title chitinase
Ensembl R09D1.1
Entrez Gene 187731 Entrez gene
SwissProt Q21857 EMBL-EBI
WormBase CE03542 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA93861 Hypothetical protein R09D1.1 [Caenorhabditis elegans] ref|NP_496021.1| R09D1.1 [Caenorhabditis elegans] 0.0
blast CAA93862 Hypothetical protein R09D1.2 [Caenorhabditis elegans] ref|NP_496020.1| R09D1.2 [Caenorhabditis elegans] 0.0
blast CAA93863 Hypothetical protein R09D1.3 [Caenorhabditis elegans] ref|NP_496019.1| R09D1.3 [Caenorhabditis elegans] 0.0
blast CAA93863 Hypothetical protein R09D1.3 [Caenorhabditis elegans] ref|NP_496019.1| R09D1.3 [Caenorhabditis elegans] 1.0E-178
blast CAA93862 Hypothetical protein R09D1.2 [Caenorhabditis elegans] ref|NP_496020.1| R09D1.2 [Caenorhabditis elegans] 1.0E-125
Protein Domains
Database ID Description E-Value
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 6.2E-117
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 3.4E-114
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 3.3E-9
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 9.7E-81
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 2.0E-109
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 3.4E-114
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 1.2E-97
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496021.1 1 31-53
R09D1.1 1 31-53
SNAP00000010204 1 31-53
GENEFINDER00000010213 2 31-53,417-439
Sequence
Target Sequence 
>C. ELEGANS:188446_AT
tggattacagcggaccatgggataataaatggggaacccctactggtccttccgccccaa
tgaactataatattggtccgagaaaacatttcactgtggattggactatgaaatactatg
catgcaaaacaagacaaccaaacaaatttaatattgtgattccattttacgcaagaatat
ggagaagtgttggagaagcaataactttgaaaactgaagtattcagaaatgcgaaattaa
tcaatggcaaagctgatggagatccgtatatatcacgattaagtgttaaacaaaagggaa
ttgaattatttccctactcttgggataatgcaactaaatcttcttacatctggaaaccca
aagaaaaaacttttctgacatttgaaaacgagagaagcatcgaaaaaaagctccaatacg
taaatgaaatgaacttgggaggagtatggatttggtcagtggatatggatgatagaatca
acactcttctcgatgctgtttcttctgataa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGATTACAGCGGACCATGGGATAA 349 545 755 Antisense
CCTTCCGCCCCAATGAACTATAATA 680 269 802 Antisense
AACATTTCACTGTGGATTGGACTAT 637 137 839 Antisense
TAATATTGTGATTCCATTTTACGCA 626 633 903 Antisense
GATGGAGATCCGTATATATCACGAT 527 407 1009 Antisense
GAATTGAATTATTTCCCTACTCTTG 479 323 1052 Antisense
ATTATTTCCCTACTCTTGGGATAAT 446 13 1059 Antisense
GGATAATGCAACTAAATCTTCTTAC 422 511 1077 Antisense
AATCTTCTTACATCTGGAAACCCAA 346 169 1091 Antisense
AGAATCAACACTCTTCTCGATGCTG 337 73 1228 Antisense
TTCTCGATGCTGTTTCTTCTGATAA 192 693 1241 Antisense
Sequence Source Affymetrix Proprietary Database