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[188445_at]

Description F41G3.12 /REP_DB=WormBase Gene ID /WP=CE25883 /TR=Q20294 /GB=AAA81112.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=laminin
Cluster 6grp_highest_10_10 > 41      6grp_high1_10_10 > 03      4grp_highest_8_8 > 50      4grp_high_8_8 > 33      6grp_highest_nonorm > 80      6grp_total > 25      4grp_total > 46      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 346
1 2 3 4 range
A 409.2
(3)
P 		169.7
(-2.1)
P 		128.4
(-3)
P 		147.8
(-2.6)
P 		281
B 435.6
(3)
P 		181.1
(-2.1)
P 		135.3
(-3)
P 		136.2
(-3)
P 		300
C 407.9
(3)
P 		183.7
(-1.2)
P 		142.8
(-2)
P 		89.4
(-3)
P 		319
avr 417.6
(3) 		178.2
(-1.9) 		135.5
(-2.8) 		124.5
(-3) 		293

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 214
1 2 3 4 5 6 range
A 342.6
(3)
P 		298
(1.7)
P 		198
(-1.1)
P 		189.1
(-1.4)
P 		146.9
(-2.6)
P 		131.7
(-3)
P 		211
B 341.1
(3)
P 		264.9
(0.8)
P 		211.9
(-0.7)
P 		170.6
(-1.8)
P 		129.6
(-3)
P 		184.9
(-1.4)
P 		212
C 343.3
(3)
P 		327.9
(2.6)
P 		277.7
(1.1)
P 		173
(-1.8)
P 		131.6
(-3)
P 		147.8
(-2.5)
P 		212
avr 342.3
(3) 		296.9
(1.7) 		229.2
(-0.3) 		177.6
(-1.8) 		136
(-3) 		154.8
(-2.5) 		206
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 134
1 2 3 4 range
A 149
(3)
P 		36.8
(-2.3)
P 		33.6
(-2.4)
P 		21.6
(-3)
P 		127
B 138.9
(3)
P 		44.7
(-2.1)
P 		31.4
(-2.9)
P 		29
(-3)
P 		110
C 135
(3)
P 		52.8
(-1.1)
P 		49.8
(-1.3)
P 		15.1
(-3)
P 		120
avr 141
(3) 		44.8
(-1.8) 		38.3
(-2.2) 		21.9
(-3) 		119

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 95
1 2 3 4 5 6 range
A 63.2
(-0.5)
P 		106
(3)
P 		43.1
(-2.1)
P 		47.9
(-1.7)
P 		44.3
(-2)
P 		32.1
(-3)
P 		74
B 118.7
(3)
P 		88.2
(0.5)
P 		51.5
(-2.5)
P 		45.2
(-3)
P 		52.6
(-2.4)
P 		68.9
(-1.1)
P 		74
C 127.2
(3)
P 		100
(1.2)
P 		70.7
(-0.7)
P 		34.8
(-3)
P 		42.6
(-2.5)
P 		49.5
(-2)
P 		92
avr 103
(3) 		98.1
(2.5) 		55.1
(-1.8) 		42.6
(-3) 		46.5
(-2.6) 		50.2
(-2.2) 		60
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188445_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4965
Sequence Type Exemplar sequence
Representative Public ID F41G3.12 NCBI
Target Description F41G3.12 /REP_DB=WormBase Gene ID /WP=CE25883 /TR=Q20294 /GB=AAA81112.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=laminin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062983(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062983 NCBI Caenorhabditis elegans F41G3.15 (F41G3.15) mRNA, complete cds. 11/11 None
F41G3.15 ENSEMBL cdna:known chromosome:CEL140:II:6760778:6770648:-1 gene:F41G3.15 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000017950 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6760773-6774890(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F41G3.15
Entrez Gene 174114 Entrez gene
WormBase CE39018 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_495384 F41G3.15 [Caenorhabditis elegans] 0.0
blast AAN39677 Hypothetical protein F41G3.15 [Caenorhabditis elegans] 0.0
blast CAE65964 Hypothetical protein CBG11147 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001791 EMBL-EBI Laminin G 1.1E-9
Pfam IPR001791 EMBL-EBI Laminin G 1.8E-15
Pfam IPR002350 EMBL-EBI Serine protease inhibitor, Kazal type 8.5E-7
Pfam IPR002350 EMBL-EBI Serine protease inhibitor, Kazal type 4.6E-5
Sequence
Target Sequence 
>C. ELEGANS:188445_AT
gagcaagatgctctcgtttttccaaacaatgtcactttctctgttggttcgtccaagagt
tcaaatttttcattcgacttccgcaccttaaaacaatttggcgttatatggcaagaagga
gcatggagtcaggctgatgaagggggagattttctattagtgttcattgaagaaggaaag
ttgtatgttggagtgaatcttggagctgatgttcatttgaaaccaatatcaacaaatgtc
actgttgctgataatcattggcattctgtttcgtttagaagaaaagaacgaaaatgtgag
ctgtgggtggattcgaagaagatccttcacgtcgtcgcttcaccaggagacgtgaatctc
gattctaatggacttgtatatcttggaggagccaatccgaagaaacataaacttctgaaa
tctttgaatctttctaacaagtttgtgggatgtgtcaagaatctgaaaatattcggagca
gaagtcaatttgctcgtcgattctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCAAGATGCTCTCGTTTTTCCAA 545 389 3937 Antisense
CAATGTCACTTTCTCTGTTGGTTCG 458 183 3963 Antisense
TCAAATTTTTCATTCGACTTCCGCA 144 629 3997 Antisense
GACTTCCGCACCTTAAAACAATTTG 58 361 4012 Antisense
AATCATTGGCATTCTGTTTCGTTTA 75 171 4189 Antisense
GTGAGCTGTGGGTGGATTCGAAGAA 638 481 4232 Antisense
CGAAGAAGATCCTTCACGTCGTCGC 614 253 4250 Antisense
CGTCGTCGCTTCACCAGGAGACGTG 475 245 4266 Antisense
GAATCTCGATTCTAATGGACTTGTA 259 329 4290 Antisense
TGGACTTGTATATCTTGGAGGAGCC 182 549 4305 Antisense
GAAGTCAATTTGCTCGTCGATTCTT 287 335 4417 Antisense
Sequence Source Affymetrix Proprietary Database