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[188436_at] chitinase

Description R09D1.7 /REP_DB=WormBase Gene ID /WP=CE03548 /TR=Q21863 /GB=CAA93867.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=chitinase
Cluster 6grp_total > 20      4grp_total > 02      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 25.4
(-3)
A 		35.6
(1)
A 		34
(0.4)
A 		40.7
(3)
A 		15
B 11.4
(-2.2)
A 		3.7
(-3)
A 		29.4
(-0.2)
A 		58.3
(3)
A 		55
C 33.5
(-0.8)
A 		34.3
(-0.7)
A 		12.3
(-3)
A 		70.3
(3)
A 		58
avr 23.4
(-3) 		24.5
(-2.8) 		25.2
(-2.7) 		56.4
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 31.6
(0.1)
A 		49.2
(3)
A 		34.5
(0.6)
A 		48.9
(3)
A 		21.1
(-1.6)
A 		12.9
(-3)
A 		36
B 35.9
(-2.1)
A 		84.6
(3)
A 		67.5
(1.2)
A 		31
(-2.6)
A 		27.5
(-3)
A 		34.9
(-2.2)
A 		57
C 5.2
(-3)
A 		63.2
(3)
A 		31.3
(-0.3)
A 		35.2
(0.1)
A 		32.2
(-0.2)
A 		6
(-2.9)
A 		58
avr 24.2
(-2.2) 		65.7
(3) 		44.4
(0.3) 		38.4
(-0.4) 		26.9
(-1.9) 		17.9
(-3) 		48
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 9.2
(3)
A 		7.7
(0.2)
A 		8.9
(2.4)
A 		6
(-3)
A 		3
B 3.6
(-1.6)
A 		0.9
(-3)
A 		6.8
(0.1)
A 		12.4
(3)
A 		12
C 11.1
(2.4)
A 		9.9
(1.5)
A 		4.3
(-3)
A 		11.8
(3)
A 		8
avr 8
(-0.2) 		6.2
(-3) 		6.7
(-2.2) 		10.1
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 5.8
(-1.9)
A 		17.5
(3)
A 		7.5
(-1.2)
A 		12.4
(0.9)
A 		6.4
(-1.6)
A 		3.1
(-3)
A 		14
B 12.5
(-1.7)
A 		28.2
(3)
A 		16.4
(-0.5)
A 		8.2
(-3)
A 		11.2
(-2.1)
A 		13
(-1.6)
A 		20
C 1.9
(-3)
A 		19.3
(3)
A 		8
(-0.9)
A 		7.1
(-1.2)
A 		10.4
(-0.1)
A 		2
(-3)
A 		17
avr 6.7
(-2.7) 		21.7
(3) 		10.6
(-1.2) 		9.2
(-1.8) 		9.3
(-1.7) 		6
(-3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188436_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3399
Sequence Type Exemplar sequence
Representative Public ID R09D1.7 NCBI
Target Description R09D1.7 /REP_DB=WormBase Gene ID /WP=CE03548 /TR=Q21863 /GB=CAA93867.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=chitinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063626(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063626 NCBI Caenorhabditis elegans R09D1.7 (chitinase) mRNA, complete cds. 11/11 None
SNAP00000010208 ENSEMBL cdna:SNAP chromosome:CEL140:II:9455326:9455886:-1 10/11 None
GENEFINDER00000010220 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9455326:9456355:-1 11/11 None
R09D1.7 ENSEMBL cdna:known chromosome:CEL140:II:9455326:9456526:-1 gene:R09D1.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9455322-9456523(-) 100.0 100.0
Public Domain and Genome References
Gene Title chitinase
Ensembl R09D1.7
Entrez Gene 187737 Entrez gene
SwissProt Q21863 EMBL-EBI
WormBase CE03548 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA93867 Hypothetical protein R09D1.7 [Caenorhabditis elegans] ref|NP_496027.1| R09D1.7 [Caenorhabditis elegans] 0.0
blast CAA93866 Hypothetical protein R09D1.6 [Caenorhabditis elegans] ref|NP_496026.1| R09D1.6 [Caenorhabditis elegans] 1.0E-160
blast CAA93868 Hypothetical protein R09D1.8 [Caenorhabditis elegans] ref|NP_496029.1| R09D1.8 [Caenorhabditis elegans] 1.0E-160
blast CAA93868 Hypothetical protein R09D1.8 [Caenorhabditis elegans] ref|NP_496029.1| R09D1.8 [Caenorhabditis elegans] 1.0E-145
blast CAA93866 Hypothetical protein R09D1.6 [Caenorhabditis elegans] ref|NP_496026.1| R09D1.6 [Caenorhabditis elegans] 1.0E-144
blast CAA93867 Hypothetical protein R09D1.7 [Caenorhabditis elegans] ref|NP_496027.1| R09D1.7 [Caenorhabditis elegans] 1.0E-109
Protein Domains
Database ID Description E-Value
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 5.1E-42
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 6.6E-88
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 4.6E-102
Sequence
Target Sequence 
>C. ELEGANS:188436_AT
ctacgaggctggaatcaatatcaccagtattgttaataatgttgattttctgaatatatt
cacaatgggatactttggtccatggccaaacccgaaaggaatgataactggggcaacttc
tcaacttttttatggagttaatggagttttgggaagaagaaattacaatattcaccactc
agtacagagctatgtttgtaaaaccgatcaatctaacaaatataacattgcaattccatt
ttatacaatgctctggaagcatgttcaaggcccaatcaaccctccaaatattgaaattta
tcgaaatgcaacatttaatggaactgtttttggagaagcgaatatgtctagaaagttggt
tcagcaggaaggttacgatctgtcgcatcctacatttaactctgaaattagagctgcatt
taaatataatgctactacagaaacattcctaacattcgaaacgaatgacacaattgcagc
aaagattgattatgtgaaggatcggatattggggggagta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTACGAGGCTGGAATCAATATCACC 136 227 498 Antisense
TTGGTCCATGGCCAAACCCGAAAGG 670 601 572 Antisense
GATAACTGGGGCAACTTCTCAACTT 125 421 600 Antisense
GGGCAACTTCTCAACTTTTTTATGG 569 493 608 Antisense
GAAATTACAATATTCACCACTCAGT 336 363 656 Antisense
TTCACCACTCAGTACAGAGCTATGT 96 687 668 Antisense
GAAGCATGTTCAAGGCCCAATCAAC 190 341 753 Antisense
GCCCAATCAACCCTCCAAATATTGA 66 287 767 Antisense
GGAAGGTTACGATCTGTCGCATCCT 185 533 864 Antisense
GTCGCATCCTACATTTAACTCTGAA 93 475 879 Antisense
GAAGGATCGGATATTGGGGGGAGTA 293 335 993 Antisense
Sequence Source Affymetrix Proprietary Database