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[188434_at] C2 domain

Description K07G5.3 /REP_DB=WormBase Gene ID /WP=CE06131 /TR=Q21303 /GB=CAA95830.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=C2 domain
Cluster 6grp_high1_10_10 > 02      6grp_total > 24      4grp_total > 38      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 160
1 2 3 4 range
A 171.5
(3)
P 		41.3
(-3)
A 		59.2
(-2.2)
A 		84.9
(-1)
P 		130
B 191.6
(3)
P 		127.7
(0.1)
M 		57.8
(-3)
A 		111.4
(-0.6)
P 		134
C 200.9
(3)
P 		82.1
(-1.8)
A 		51.6
(-3)
A 		91
(-1.4)
P 		149
avr 188
(3) 		83.7
(-1.7) 		56.2
(-3) 		95.8
(-1.2) 		132

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 127
1 2 3 4 5 6 range
A 157.3
(3)
P 		123.7
(0.2)
P 		111.2
(-0.8)
P 		111.1
(-0.8)
P 		85.2
(-3)
P 		85.1
(-3)
P 		72
B 180.2
(3)
P 		99.3
(-0.8)
P 		128.9
(0.6)
P 		106.3
(-0.5)
P 		53.4
(-3)
P 		69.1
(-2.3)
P 		127
C 103.9
(-0.1)
P 		156.3
(3)
P 		117.2
(0.7)
P 		57.6
(-2.8)
A 		54.6
(-3)
P 		79.2
(-1.5)
P 		102
avr 147.1
(3) 		126.4
(1.5) 		119.1
(1) 		91.7
(-1) 		64.4
(-3) 		77.8
(-2) 		83
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 62.4
(3)
P 		9
(-3)
A 		15.5
(-2.3)
A 		12.4
(-2.6)
P 		53
B 61.1
(3)
P 		31.5
(-0.7)
M 		13.4
(-3)
A 		23.7
(-1.7)
P 		48
C 66.5
(3)
P 		23.6
(-2)
A 		18
(-2.7)
A 		15.3
(-3)
P 		51
avr 63.3
(3) 		21.4
(-2.3) 		15.6
(-3) 		17.1
(-2.8) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 29
(-0.9)
P 		44
(3)
P 		24.2
(-2.1)
P 		28.2
(-1.1)
P 		25.7
(-1.7)
P 		20.7
(-3)
P 		23
B 62.7
(3)
P 		33.1
(-1.3)
P 		31.3
(-1.6)
P 		28.2
(-2)
P 		21.7
(-3)
P 		25.8
(-2.4)
P 		41
C 38.5
(1.5)
P 		47.7
(3)
P 		29.8
(0)
P 		11.6
(-3)
A 		17.7
(-2)
P 		26.5
(-0.5)
P 		36
avr 43.4
(3) 		41.6
(2.5) 		28.4
(-1.1) 		22.7
(-2.7) 		21.7
(-3) 		24.3
(-2.3) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188434_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1545
Sequence Type Exemplar sequence
Representative Public ID K07G5.3 NCBI
Target Description K07G5.3 /REP_DB=WormBase Gene ID /WP=CE06131 /TR=Q21303 /GB=CAA95830.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=C2 domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059625(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059625 NCBI Caenorhabditis elegans K07G5.3 (K07G5.3) mRNA, complete cds. 11/11 None
SNAP00000015325 ENSEMBL cdna:SNAP chromosome:CEL140:I:7169147:7174586:1 11/11 None
K07G5.3 ENSEMBL cdna:known chromosome:CEL140:I:7169147:7174586:1 gene:K07G5.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000015331 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7169077-7174517(+) 100.0 100.0
Public Domain and Genome References
Gene Title C2 domain
Ensembl K07G5.3
Entrez Gene 187121 Entrez gene
SwissProt Q21303 EMBL-EBI
WormBase CE06131 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA95830 Hypothetical protein K07G5.3 [Caenorhabditis elegans] ref|NP_492026.1| K07G5.3 [Caenorhabditis elegans] 0.0
blast CAE73085 Hypothetical protein CBG20463 [Caenorhabditis briggsae] 0.0
blast XP_420777 PREDICTED: similar to RIKEN cDNA 5730509K17 gene [Gallus gallus] 4.0E-37
Protein Domains
Database ID Description E-Value
Pfam IPR000008 EMBL-EBI C2 domain 6.3E-9
Sequence
Target Sequence 
>C. ELEGANS:188434_AT
gacatatttatccgattcttgattcaaattgtgctctcgaaaagatatacggagcatttg
ataacaagaactactatgcaaatgttcaatcatatgatcagactccacagatttctttga
atttggataaatatacaaattggaaacctcttttcaatgtaaacgaagaaccattagaaa
gtattcaaactgccacagttcggtattcaaaacttccagaagattggatagttgaacttc
gaatatctttggaacgtgaaattaagattcgattcgacgaatcccgaaaacacgctattc
ctcaatggcatttggttgctgctcgacaactccgagagattctggaaaatccacgtggaa
taactgaaagttcagtagaagagcgaattgtgagattaaaagaaggttatgaactaacag
taattataatccgtgtgaactattcttcaatggaagagtgtgtacatgaagtactatcaa
atagacttcaagacactccggatctaaattctcaatttgcaattgcagttaatgttattg
acttttttgctcatgtta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACATATTTATCCGATTCTTGATTC 133 371 3020 Antisense
TTCTTGATTCAAATTGTGCTCTCGA 27 691 3035 Antisense
GATCAGACTCCACAGATTTCTTTGA 314 421 3115 Antisense
AACTGCCACAGTTCGGTATTCAAAA 290 141 3207 Antisense
AATCCCGAAAACACGCTATTCCTCA 158 167 3299 Antisense
CACGCTATTCCTCAATGGCATTTGG 87 201 3310 Antisense
AATGGCATTTGGTTGCTGCTCGACA 596 161 3323 Antisense
GTTGCTGCTCGACAACTCCGAGAGA 696 439 3334 Antisense
AGACTTCAAGACACTCCGGATCTAA 255 71 3502 Antisense
GACACTCCGGATCTAAATTCTCAAT 334 365 3511 Antisense
GTTATTGACTTTTTTGCTCATGTTA 10 449 3553 Antisense
Sequence Source Affymetrix Proprietary Database