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[188433_at]

Description W04C9.3 /REP_DB=WormBase Gene ID /WP=CE18334 /TR=Q9TZE2 /GB=AAC68726.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=cuticlin
Cluster 6grp_total > 08      4grp_total > 19      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 17.2
(0.8)
A 		10.4
(-3)
A 		13.9
(-1.1)
A 		21.2
(3)
A 		11
B 8.9
(-3)
A 		10.9
(3)
A 		10.2
(0.9)
A 		9.7
(-0.6)
A 		2
C 14.4
(-2.1)
A 		26.7
(0.1)
A 		9.4
(-3)
A 		42.9
(3)
A 		34
avr 13.5
(-2) 		16
(-0.9) 		11.2
(-3) 		24.6
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 11.6
(-1.3)
A 		8.5
(-2.5)
A 		23.1
(3)
A 		9.6
(-2.1)
A 		7.1
(-3)
A 		16.5
(0.5)
A 		16
B 11.8
(-1.1)
A 		10.6
(-1.7)
A 		8.3
(-2.8)
A 		7.9
(-3)
A 		20
(3)
A 		9
(-2.5)
A 		12
C 29.9
(3)
A 		18.1
(-0.7)
A 		11
(-3)
A 		17.2
(-1)
A 		12
(-2.7)
A 		11.9
(-2.7)
A 		19
avr 17.8
(3) 		12.4
(-2.2) 		14.1
(-0.6) 		11.6
(-3) 		13
(-1.6) 		12.5
(-2.1) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 6.3
(3)
A 		2.3
(-3)
A 		3.6
(-1.1)
A 		3.1
(-1.8)
A 		4
B 2.8
(3)
A 		2.7
(2.1)
A 		2.4
(-0.4)
A 		2.1
(-3)
A 		1
C 4.8
(-1)
A 		7.7
(3)
A 		3.3
(-3)
A 		7.2
(2.3)
A 		4
avr 4.6
(3) 		4.2
(1.4) 		3.1
(-3) 		4.1
(1) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 2.1
(-3)
A 		3
(-1.1)
A 		5
(3)
A 		2.4
(-2.4)
A 		2.1
(-3)
A 		4
(0.9)
A 		3
B 4.1
(-0.9)
A 		3.5
(-1.5)
A 		2
(-3)
A 		2.1
(-2.9)
A 		8.1
(3)
A 		3.4
(-1.6)
A 		6
C 11.1
(3)
A 		5.5
(-1)
A 		2.8
(-3)
A 		3.5
(-2.5)
A 		3.9
(-2.2)
A 		4
(-2.1)
A 		8
avr 5.8
(3) 		4
(-0.5) 		3.3
(-1.8) 		2.7
(-3) 		4.7
(0.9) 		3.8
(-0.9) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188433_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2602
Sequence Type Exemplar sequence
Representative Public ID W04C9.3 NCBI
Target Description W04C9.3 /REP_DB=WormBase Gene ID /WP=CE18334 /TR=Q9TZE2 /GB=AAC68726.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=cuticlin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058335
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000019996 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:473722:481901:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_058335 6/11 Cross Hyb Matching Probes None
SNAP00000019987 6/11 Cross Hyb Matching Probes None
W04C9.3 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:477705-481901(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC68726 Hypothetical protein W04C9.3 [Caenorhabditis elegans] ref|NP_490736.2| W04C9.3 [Caenorhabditis elegans] 0.0
blast CAE61275 Hypothetical protein CBG05090 [Caenorhabditis briggsae] 1.0E-175
blast CAE57551 Hypothetical protein CBG00529 [Caenorhabditis briggsae] 4.0E-36
Protein Domains
Database ID Description E-Value
Pfam IPR001507 EMBL-EBI Endoglin/CD105 antigen 5.8E-17
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000019996 1 420-442
Sequence
Target Sequence 
>C. ELEGANS:188433_AT
gccaccgaactttttgacatttttgcgcaactgtatgccgcacaaaactttacgtcagaa
gtgggcgtgtccgcctgcaggccccgatgttttagatacggaatcccactggagccgtgg
atgaaagagccctctcctcccactgatgacgtggcaaacatcacctcagaaggcgagcca
atgcctcggctcatcaccgaagaggaacaatatcaaatcgagtcgaaccatgttgaggcg
cgagaaaaacgatttgctcatcgattattcaatatcacatcggaagatctctatgttgag
ccaaccgtcgagccaatggaagtagagatgcctggagcaccgagagaaactgctcggagg
gtgtctgagccatgtgtctcggttgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCACCGAACTTTTTGACATTTTTG 238 277 910 Antisense
TATGCCGCACAAAACTTTACGTCAG 560 651 943 Antisense
GTCAGAAGTGGGCGTGTCCGCCTGC 307 465 963 Antisense
TGCAGGCCCCGATGTTTTAGATACG 475 577 985 Antisense
TACGGAATCCCACTGGAGCCGTGGA 12 637 1006 Antisense
AGCCGTGGATGAAAGAGCCCTCTCC 224 83 1022 Antisense
ATGACGTGGCAAACATCACCTCAGA 453 45 1055 Antisense
AGAAGGCGAGCCAATGCCTCGGCTC 326 75 1077 Antisense
TGCCTCGGCTCATCACCGAAGAGGA 458 585 1091 Antisense
TATGTTGAGCCAACCGTCGAGCCAA 98 653 1201 Antisense
GTCTGAGCCATGTGTCTCGGTTGAA 529 469 1272 Antisense
Sequence Source Affymetrix Proprietary Database