[Home] | [Total List]

[188432_s_at] G-protein

Description F46C5.9 /REP_DB=WormBase Gene ID /WP=CE10584 /TR=P90814 /GB=CAA91052.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=G-protein
Cluster 6grp_highest_10_10 > 48      6grp_high1_10_10 > 83      4grp_highest_8_8 > 11      4grp_high_8_8 > 47      6grp_highest_nonorm > 55      6grp_total > 74      4grp_total > 48      6grp_high1_sub > 04      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1105
1 2 3 4 range
A 1043.9
(-3)
P 		1633.6
(1.9)
P 		1771.2
(3)
P 		1278.5
(-1.1)
P 		727
B 1209.1
(-3)
P 		1835.8
(1)
P 		2148.5
(3)
P 		1233.7
(-2.8)
P 		939
C 1124.4
(-3)
P 		1607.4
(1.4)
P 		1785.3
(3)
P 		1296.8
(-1.4)
P 		661
avr 1125.8
(-3) 		1692.3
(1.4) 		1901.7
(3) 		1269.7
(-1.9) 		776

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 705
1 2 3 4 5 6 range
A 1628.8
(0.6)
P 		1292.2
(-3)
P 		1852.5
(3)
P 		1844.9
(2.9)
P 		1623.9
(0.6)
P 		1574.1
(0)
P 		560
B 1544.7
(-1)
P 		1367.6
(-3)
P 		1599.1
(-0.4)
P 		1828.4
(2.1)
P 		1911
(3)
P 		1741.7
(1.1)
P 		543
C 1205.9
(-3)
P 		1444.7
(-0.4)
P 		1569.1
(1)
P 		1754.4
(3)
P 		1441.9
(-0.4)
P 		1750.9
(3)
P 		549
avr 1459.8
(-1.8) 		1368.2
(-3) 		1673.6
(1.2) 		1809.2
(3) 		1658.9
(1) 		1688.9
(1.4) 		441
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 435
1 2 3 4 range
A 380.1
(1.2)
P 		354.6
(0.6)
P 		463
(3)
P 		187.2
(-3)
P 		276
B 385.6
(0.1)
P 		453.4
(1.9)
P 		497.9
(3)
P 		262.9
(-3)
P 		235
C 372.2
(-0.7)
P 		462.1
(0.6)
P 		622.2
(3)
P 		218.7
(-3)
P 		404
avr 379.3
(0.1) 		423.4
(0.9) 		527.7
(3) 		222.9
(-3) 		305

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 476
1 2 3 4 5 6 range
A 300.2
(-3)
P 		459.6
(2)
P 		403.4
(0.3)
P 		467.9
(2.3)
P 		490
(3)
P 		383.2
(-0.4)
P 		190
B 537.5
(-0.7)
P 		455.2
(-2)
P 		388.3
(-3)
P 		484.3
(-1.5)
P 		776.4
(3)
P 		649.5
(1)
P 		388
C 447
(-0.6)
P 		440.8
(-0.7)
P 		399.4
(-1.8)
P 		352.8
(-3)
P 		466.6
(-0.1)
P 		586.1
(3)
P 		233
avr 428.2
(-2) 		451.9
(-1.2) 		397
(-3) 		435
(-1.7) 		577.7
(3) 		539.6
(1.7) 		181
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188432_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3578
Sequence Type Exemplar sequence
Representative Public ID F46C5.9 NCBI
Target Description F46C5.9 /REP_DB=WormBase Gene ID /WP=CE10584 /TR=P90814 /GB=CAA91052.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=G-protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063476(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063476 NCBI Caenorhabditis elegans F46C5.9 (G-protein) mRNA, complete cds. 11/11 None
SNAP00000026211 ENSEMBL cdna:SNAP chromosome:CEL140:II:8808709:8809886:-1 11/11 None
F46C5.9 ENSEMBL cdna:known chromosome:CEL140:II:8808561:8810646:-1 gene:F46C5.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8808705-8810635(-) 100.0 100.0
Public Domain and Genome References
Gene Title G-protein
Ensembl F46C5.9
Entrez Gene 174409 Entrez gene
SwissProt P90814 EMBL-EBI
WormBase CE10584 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:255711_AT transducin family protein / WD-40 repeat family protein at
CANINE:1595578_AT similar to Transducin beta-like 2 protein (WS beta-transducin repeats protein) (WS-betaTRP) (Williams-Beuren syndrome chromosome region 13 protein) cfa
CANINE:1584763_AT similar to Transducin beta-like 2 protein (WS beta-transducin repeats protein) (WS-betaTRP) (Williams-Beuren syndrome chromosome region 13 protein) cfa
CANINE_2:CFA.12098.1.A1_AT similar to Transducin beta-like 2 protein (WS beta-transducin repeats protein) (WS-betaTRP) (Williams-Beuren syndrome chromosome region 13 protein) cfa
CANINE_2:CFAAFFX.20169.1.S1_AT similar to Transducin beta-like 2 protein (WS beta-transducin repeats protein) (WS-betaTRP) (Williams-Beuren syndrome chromosome region 13 protein) cfa
CANINE_2:CFAAFFX.20169.1.S1_S_AT similar to Transducin beta-like 2 protein (WS beta-transducin repeats protein) (WS-betaTRP) (Williams-Beuren syndrome chromosome region 13 protein) cfa
HG-U133A_2:212685_S_AT transducin (beta)-like 2 hs
HG-FOCUS:212685_S_AT transducin (beta)-like 2 hs
HG-U133_PLUS_2:212685_S_AT transducin (beta)-like 2 hs
HG-U133A:212685_S_AT transducin (beta)-like 2 hs
HU35KSUBA:W96311_AT transducin (beta)-like 2 hs
HU35KSUBC:RC_AA478998_AT transducin (beta)-like 2 hs
HU35KSUBC:RC_AA412452_AT transducin (beta)-like 2 hs
HU35KSUBD:RC_AA411429_S_AT transducin (beta)-like 2 hs
U133_X3P:HS.52515.1.S2_3P_AT transducin (beta)-like 2 hs
U133_X3P:HS.52515.1.S1_3P_A_AT transducin (beta)-like 2 hs
HG-U133A_2:212679_AT transducin (beta)-like 2 hs
HG-U133_PLUS_2:212679_AT transducin (beta)-like 2 hs
HG-U133A:212679_AT transducin (beta)-like 2 hs
HG-U95AV2:36090_AT transducin (beta)-like 2 hs
HG-U95E:69568_AT transducin (beta)-like 2 hs
MOUSE430_2:1450412_AT transducin (beta)-like 2 mm
MOE430A:1450412_AT transducin (beta)-like 2 mm
MOUSE430A_2:1450412_AT transducin (beta)-like 2 mm
MG-U74AV2:93184_AT transducin (beta)-like 2 mm
MOUSE430A_2:1434224_AT transducin (beta)-like 2 mm
MOE430A:1434224_AT transducin (beta)-like 2 mm
MOUSE430_2:1434224_AT transducin (beta)-like 2 mm
MU11KSUBA:AA277361_AT transducin (beta)-like 2 mm
MU11KSUBA:AA209083_S_AT transducin (beta)-like 2 mm
MG-U74BV2:116134_AT transducin (beta)-like 2 mm
MOE430A:1421927_AT transducin (beta)-like 2 mm
MOUSE430A_2:1421927_AT transducin (beta)-like 2 mm
MOUSE430_2:1421927_AT transducin (beta)-like 2 mm
MOE430B:1436603_AT transducin (beta)-like 2 mm
MOUSE430_2:1436603_AT transducin (beta)-like 2 mm
MU19KSUBA:TC17668_AT Transducin (beta)-like 2, mRNA (cDNA clone MGC:35984 IMAGE:5051833) mm
MU19KSUBA:TC19649_AT Transducin (beta)-like 2, mRNA (cDNA clone MGC:35984 IMAGE:5051833) mm
Protein Similarities
Method ID Description E-Value
blast CAA92666 Hypothetical protein F46C5.9 [Caenorhabditis elegans] emb|CAA91052.1| Hypothetical protein F46C5.9 [Caenorhabditis elegans] emb|CAB05407.1| Hypothetical protein F46C5.9 [Caenorhabditis elegans] ref|NP_495877.1| F46C5.9 [Caenorhabditis elegans] 0.0
blast CAE59739 Hypothetical protein CBG03180 [Caenorhabditis briggsae] 0.0
blast CAA92666 Hypothetical protein F46C5.9 [Caenorhabditis elegans] emb|CAA91052.1| Hypothetical protein F46C5.9 [Caenorhabditis elegans] emb|CAB05407.1| Hypothetical protein F46C5.9 [Caenorhabditis elegans] ref|NP_495877.1| F46C5.9 [Caenorhabditis elegans] 1.0E-138
blast CAE59739 Hypothetical protein CBG03180 [Caenorhabditis briggsae] 1.0E-122
blast AAH65682 Transducin (beta)-like 2 [Danio rerio] ref|NP_997932.1| transducin (beta)-like 2 [Danio rerio] 4.0E-63
blast AAH65682 Transducin (beta)-like 2 [Danio rerio] ref|NP_997932.1| transducin (beta)-like 2 [Danio rerio] 2.0E-36
Protein Domains
Database ID Description E-Value
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 5.1E-9
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.21
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.57
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 2.5E-7
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.012
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.64
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.57
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 2.5E-7
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.012
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495877.1 1 7-29
F46C5.9 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:188432_S_AT
caatctggagtacttgctgctgctttcaacaactcatcgactcgtgcggtcacagtctcc
agagacggaaaatggcgcattttcgacaccgatattcgctatgaggctgggcaagattcc
aaaattttgagagagggaagctgggctcctctgcatgccgccacaagtgaacacgtgcga
ttagaaatgagcccaagtggtgactcatttgcagtttcgttcaagacagatttgaaggtg
ttcgcttcggaagacgaaaccaaggactatccggaattgaaagacatctgctcgactaca
atttcatcgattgcctattcctctgacggaaaatatattgcaacatgtggagacaaatat
gtccgtgtcattcggaatgttccagagtggcacagcagagtggttaaactgaaccgagag
cttccagaaatcacacaggaaggtgctcgtcgccgtatcaaagagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAATCTGGAGTACTTGCTGCTGCTT 443 181 859 Antisense
TCAACAACTCATCGACTCGTGCGGT 260 629 884 Antisense
AATGGCGCATTTTCGACACCGATAT 61 163 929 Antisense
ACACCGATATTCGCTATGAGGCTGG 455 109 944 Antisense
TCTGCATGCCGCCACAAGTGAACAC 386 607 1008 Antisense
GAGCCCAAGTGGTGACTCATTTGCA 38 385 1047 Antisense
GACATCTGCTCGACTACAATTTCAT 142 371 1141 Antisense
GATTGCCTATTCCTCTGACGGAAAA 386 433 1167 Antisense
GAACCGAGAGCTTCCAGAAATCACA 304 347 1269 Antisense
ATCACACAGGAAGGTGCTCGTCGCC 541 27 1288 Antisense
GGTGCTCGTCGCCGTATCAAAGAGC 588 499 1300 Antisense
Sequence Source Affymetrix Proprietary Database