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[188431_s_at]

Description C14F5.1 /REP_DB=WormBase Gene ID /WP=CE01780 /GEN=bcl-2 /TR=SW:Q09969 /GB=AAA68403.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 0      6grp_high1_10_10 > 0      4grp_highest_8_8 > 47      4grp_high_8_8 > 11      6grp_highest_nonorm > 21      6grp_total > 09      4grp_total > 13      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1761
1 2 3 4 range
A 1442
(0.1)
P 		1039.1
(-1.3)
P 		545.8
(-3)
P 		2287.2
(3)
P 		1741
B 1569.5
(0.5)
P 		974
(-1.6)
P 		560.5
(-3)
P 		2307.1
(3)
P 		1747
C 1394.5
(-0.1)
P 		949.4
(-1.7)
P 		575.7
(-3)
P 		2274.6
(3)
P 		1699
avr 1468.7
(0.2) 		987.5
(-1.5) 		560.7
(-3) 		2289.6
(3) 		1729

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 892
1 2 3 4 5 6 range
A 1669.4
(3)
P 		1034.9
(-2.4)
P 		990.2
(-2.8)
P 		1238
(-0.7)
P 		1266.3
(-0.4)
P 		968.2
(-3)
P 		701
B 1723.8
(3)
P 		1078.3
(-1.4)
P 		1042.3
(-1.7)
P 		1360.8
(0.5)
P 		1222
(-0.4)
P 		845.3
(-3)
P 		879
C 1348
(0.2)
P 		1143.9
(-1.3)
P 		1048.1
(-2)
P 		1737.1
(3)
P 		987.5
(-2.4)
P 		902.5
(-3)
P 		835
avr 1580.4
(3) 		1085.7
(-1.4) 		1026.9
(-1.9) 		1445.3
(1.8) 		1158.6
(-0.7) 		905.3
(-3) 		675
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 395
1 2 3 4 range
A 525
(3)
P 		225.6
(-1.7)
P 		142.7
(-3)
P 		334.8
(0)
P 		382
B 500.5
(3)
P 		240.6
(-1.2)
P 		129.9
(-3)
P 		491.7
(2.9)
P 		371
C 461.6
(3)
P 		273
(-1.3)
P 		200.6
(-3)
P 		383.5
(1.2)
P 		261
avr 495.7
(3) 		246.4
(-1.4) 		157.7
(-3) 		403.3
(1.4) 		338

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 384
1 2 3 4 5 6 range
A 307.7
(0.3)
P 		368.1
(2.5)
P 		215.6
(-3)
P 		314
(0.5)
P 		382.1
(3)
P 		235.7
(-2.3)
P 		167
B 599.8
(3)
P 		358.9
(-1.2)
P 		253.1
(-3)
P 		360.4
(-1.1)
P 		496.5
(1.2)
P 		315.2
(-1.9)
P 		347
C 499.6
(3)
P 		349
(-0.9)
P 		266.7
(-3)
P 		349.3
(-0.9)
P 		319.5
(-1.6)
P 		302.1
(-2.1)
P 		233
avr 469
(3) 		358.7
(0) 		245.1
(-3) 		341.2
(-0.4) 		399.4
(1.1) 		284.3
(-1.9) 		224
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188431_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16954
Sequence Type Exemplar sequence
Representative Public ID C14F5.1 NCBI
Target Description C14F5.1 /REP_DB=WormBase Gene ID /WP=CE01780 /GEN=bcl-2 /TR=SW:Q09969 /GB=AAA68403.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076938(11), NM_076939(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076938 NCBI Caenorhabditis elegans C14F5.1a (C14F5.1) mRNA, complete cds. 11/11 None
NM_076939 NCBI Caenorhabditis elegans C14F5.1b (C14F5.1) mRNA, complete cds. 11/11 None
SNAP00000042705 ENSEMBL cdna:SNAP chromosome:CEL140:X:7954317:7955556:1 11/11 None
GENEFINDER00000042712 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7954317:7955805:1 11/11 None
C14F5.1a ENSEMBL cdna:known chromosome:CEL140:X:7954301:7955645:1 gene:C14F5.1 11/11 None
C14F5.1b ENSEMBL cdna:known chromosome:CEL140:X:7954319:7955645:1 gene:C14F5.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7954348-7955644(+) 100.0 100.0
Public Domain and Genome References
Ensembl C14F5.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD32265 NIP3 [Caenorhabditis elegans] 1.0E-105
blast AAD32265 NIP3 [Caenorhabditis elegans] 1.0E-100
blast AAA68403 Hypothetical protein C14F5.1a [Caenorhabditis elegans] ref|NP_509339.3| C14F5.1a [Caenorhabditis elegans] sp|Q09969|BNIP3_CAEEL NIP3 homolog (CeBNIP3) gb|AAC31574.1| Bcl-2/adenovirus E1B 19K-interacting protein 3 [Caenorhabditis elegans] 1.0E-100
blast AAA68403 Hypothetical protein C14F5.1a [Caenorhabditis elegans] ref|NP_509339.3| C14F5.1a [Caenorhabditis elegans] sp|Q09969|BNIP3_CAEEL NIP3 homolog (CeBNIP3) gb|AAC31574.1| Bcl-2/adenovirus E1B 19K-interacting protein 3 [Caenorhabditis elegans] 2.0E-98
blast AAL02433 Hypothetical protein C14F5.1b [Caenorhabditis elegans] ref|NP_509340.1| C14F5.1b [Caenorhabditis elegans] 5.0E-98
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509339.3 1 178-200
NP_509340.1 1 175-197
C14F5.1a 1 178-200
C14F5.1b 1 175-197
Sequence
Target Sequence 
>C. ELEGANS:188431_S_AT
catcggctcaacagacaacaccatccgcaaaagccgtctcaaacccatttatcaccccat
tgaccgagagtacacctggtatgtcagaatcgtgggtggaactggcaccaagccgtacca
gtttgtgcagtagcgtcgatattaatatggtgatcattgatgaaaaagataaggattcga
ggctgagcccagtctcaatcgcacaatctcctcacgtggaattcgagagcttagaacaag
taaagtacaagttggttagagaaatgcttcctcccggaaagaatactgattggatttggg
attggagcagtcggccagaaaatacacctccaaagactgtccgtatggttcaatatggct
ccaaccttaccactccgccaaactctcccgagccagagctctaccaatacttgccatgcg
aatctgattcgcttttcaacgttcgcgtagtctttggtttcttagtcaccaacatcttca
gctttgtcgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATCGGCTCAACAGACAACACCATC 38 213 98 Antisense
ATCACCCCATTGACCGAGAGTACAC 635 17 148 Antisense
GGCACCAAGCCGTACCAGTTTGTGC 544 535 201 Antisense
GATTCGAGGCTGAGCCCAGTCTCAA 244 433 271 Antisense
CGCACAATCTCCTCACGTGGAATTC 258 255 297 Antisense
GTTAGAGAAATGCTTCCTCCCGGAA 654 439 352 Antisense
AATACACCTCCAAAGACTGTCCGTA 412 171 418 Antisense
TCAATATGGCTCCAACCTTACCACT 2 633 447 Antisense
ATCTGATTCGCTTTTCAACGTTCGC 707 33 519 Antisense
GCGTAGTCTTTGGTTTCTTAGTCAC 416 291 542 Antisense
TCACCAACATCTTCAGCTTTGTCGT 632 625 563 Antisense
Sequence Source Affymetrix Proprietary Database