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[188427_at] 7TM chemoreceptor, sre family

Description B0495.1 /REP_DB=WormBase Gene ID /WP=CE06712 /GEN=sre-1 /TR=SW:Q09213 /GB=AAA62530.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 12      4grp_total > 11      6grp_cgc > 43      6grp_cgc_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 204
1 2 3 4 range
A 63.2
(-2)
P 		58.4
(-2.1)
A 		29.1
(-3)
A 		232.9
(3)
P 		204
B 107.1
(0.5)
P 		94.7
(-0.3)
A 		56.1
(-3)
A 		142.6
(3)
P 		87
C 65.1
(-2.3)
P 		73.1
(-2)
A 		47.1
(-3)
A 		202.7
(3)
P 		156
avr 78.5
(-1.6) 		75.4
(-1.7) 		44.1
(-3) 		192.7
(3) 		149

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 130
1 2 3 4 5 6 range
A 117.3
(2)
P 		104.8
(0.6)
P 		127
(3)
P 		86.6
(-1.3)
P 		83.4
(-1.7)
P 		70.8
(-3)
A 		56
B 113.7
(1.5)
P 		130.6
(3)
P 		104.1
(0.6)
P 		71.9
(-2.2)
P 		66
(-2.7)
P 		63
(-3)
A 		68
C 82.1
(-1.1)
P 		171.6
(3)
P 		66.8
(-1.8)
P 		83.8
(-1)
P 		65.4
(-1.9)
A 		41.2
(-3)
A 		130
avr 104.4
(0.6) 		135.7
(3) 		99.3
(0.2) 		80.8
(-1.3) 		71.6
(-2) 		58.3
(-3) 		77
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 23
(0.5)
P 		12.7
(-1.8)
A 		7.6
(-3)
A 		34.1
(3)
P 		27
B 34.1
(3)
P 		23.4
(-0)
A 		13
(-3)
A 		30.4
(1.9)
P 		21
C 21.6
(-1.2)
P 		21
(-1.4)
A 		16.4
(-3)
A 		34.2
(3)
P 		18
avr 26.2
(1) 		19
(-1) 		12.3
(-3) 		32.9
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 21.6
(-1.7)
P 		37.3
(3)
P 		27.6
(0.1)
P 		22
(-1.6)
P 		25.2
(-0.6)
P 		17.2
(-3)
A 		20
B 39.6
(2)
P 		43.5
(3)
P 		25.3
(-1.5)
P 		19.1
(-3)
P 		26.8
(-1.1)
P 		23.5
(-1.9)
A 		24
C 30.4
(-0.4)
P 		52.4
(3)
P 		17
(-2.5)
P 		16.9
(-2.5)
P 		21.2
(-1.8)
A 		13.8
(-3)
A 		39
avr 30.5
(-0.2) 		44.4
(3) 		23.3
(-1.8) 		19.3
(-2.7) 		24.4
(-1.6) 		18.2
(-3) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188427_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5764
Sequence Type Exemplar sequence
Representative Public ID B0495.1 NCBI
Target Description B0495.1 /REP_DB=WormBase Gene ID /WP=CE06712 /GEN=sre-1 /TR=SW:Q09213 /GB=AAA62530.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063220(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063220 NCBI Caenorhabditis elegans Serpentine Receptor, class E (epsilon) family member (sre-1) (sre-1) mRNA, complete cds. 11/11 None
GENEFINDER00000031538 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7709746:7711760:1 11/11 None
B0495.1 ENSEMBL cdna:known chromosome:CEL140:II:7709704:7711092:1 gene:B0495.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7709700-7711089(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sre family
Gene Symbol sre-1
Ensembl B0495.1
Entrez Gene 191827 Entrez gene
SwissProt Q09213 EMBL-EBI
WormBase CE01759 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA62530 Serpentine receptor, class e (epsilon) protein 1 [Caenorhabditis elegans] ref|NP_495621.2| Serpentine Receptor, class E (epsilon) family member (sre-1) [Caenorhabditis elegans] pir||G88216 protein B0495.1 [imported] - Caenorhabditis elegans 0.0
blast 2123261AR chemosensory receptor 0.0
blast 2123261AR chemosensory receptor 1.0E-180
blast Q09213 Serpentine receptor class epsilon-1 (Protein sre-1) 1.0E-179
blast Q09213 Serpentine receptor class epsilon-1 (Protein sre-1) 1.0E-174
blast AAA62530 Serpentine receptor, class e (epsilon) protein 1 [Caenorhabditis elegans] ref|NP_495621.2| Serpentine Receptor, class E (epsilon) family member (sre-1) [Caenorhabditis elegans] pir||G88216 protein B0495.1 [imported] - Caenorhabditis elegans 1.0E-174
blast 2123261AR chemosensory receptor 1.0E-171
blast Q09213 Serpentine receptor class epsilon-1 (Protein sre-1) 1.0E-165
Protein Domains
Database ID Description E-Value
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 6.8E-31
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 6.7E-29
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 1.0E-28
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495621.2 7 23-45,58-80,100-122,143-165,170-192,228-250,265-287
B0495.1 7 23-45,58-80,100-122,143-165,170-192,228-250,265-287
GENEFINDER00000031538 7 10-32,44-66,86-108,129-151,156-178,214-236,251-273
Sequence
Target Sequence 
>C. ELEGANS:188427_AT
tggaataagcctcgcagttgcatttgaacgattttttgcaacgtattttgtggagactta
tgagaaaaagaagagaaagtggatttcacttttcctatgttcagagttcacagttgcgtg
tggtgtatctgcaatagttatgctttatgacctcctaccatttgcagttatggcatttct
aggcgtgtttataagttgcgcttcgtttttgttttatcttgtactgttctacatgaataa
acgtcgacttcacactatacaacaagatagagacaatgacgtgtacacattgagtgtccg
ttttcagttatctgaaaatttaaaagtcatgaccctgctccgaaacgtggtactattttc
gggtgtcaacaactttgtaatggcaattattctgacaatgtacatgtctaaatcatttaa
agtatcttacccattagctactttat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGAATAAGCCTCGCAGTTGCATTT 394 545 360 Antisense
GATTTCACTTTTCCTATGTTCAGAG 17 429 441 Antisense
TAGTTATGCTTTATGACCTCCTACC 359 653 494 Antisense
GACCTCCTACCATTTGCAGTTATGG 543 381 508 Antisense
TTATGGCATTTCTAGGCGTGTTTAT 636 679 527 Antisense
TATAAGTTGCGCTTCGTTTTTGTTT 183 651 549 Antisense
AAACGTCGACTTCACACTATACAAC 546 125 598 Antisense
TGAGTGTCCGTTTTCAGTTATCTGA 8 569 650 Antisense
TTAAAAGTCATGACCCTGCTCCGAA 97 683 679 Antisense
GTGGTACTATTTTCGGGTGTCAACA 509 489 706 Antisense
GTATCTTACCCATTAGCTACTTTAT 144 453 781 Antisense
Sequence Source Affymetrix Proprietary Database