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[188426_at] esterase

Description K11G9.2 /REP_DB=WormBase Gene ID /WP=CE07375 /TR=Q23009 /GB=AAB04975.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=esterase
Cluster 6grp_highest_10_10 > 48      6grp_high1_10_10 > 74      4grp_highest_8_8 > 10      4grp_high_8_8 > 63      6grp_highest_nonorm > 90      6grp_total > 74      4grp_total > 56      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 90.2
(-3)
P 		124.4
(1.1)
P 		140.1
(3)
P 		90.5
(-3)
P 		50
B 103.8
(0)
P 		134.2
(2.5)
P 		140.1
(3)
P 		66.9
(-3)
P 		73
C 92.3
(-3)
P 		105.5
(-1.9)
P 		163.8
(3)
P 		107.1
(-1.8)
P 		72
avr 95.4
(-2.3) 		121.4
(0.3) 		148
(3) 		88.2
(-3) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 72.2
(-3)
P 		103.2
(-0.1)
P 		137.3
(3)
P 		126.5
(2)
P 		85.6
(-1.8)
P 		93.5
(-1)
P 		65
B 56.8
(-3)
P 		75.1
(-1.4)
P 		72.2
(-1.6)
P 		79.1
(-1)
P 		104.1
(1.2)
P 		125.1
(3)
P 		68
C 83.6
(-1.6)
P 		74.5
(-3)
P 		112.2
(3)
P 		89.2
(-0.7)
P 		103.6
(1.6)
P 		92.2
(-0.2)
P 		38
avr 70.9
(-3) 		84.3
(-0.8) 		107.2
(3) 		98.3
(1.5) 		97.8
(1.4) 		103.6
(2.4) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 32.8
(2)
P 		27
(0.5)
P 		36.6
(3)
P 		13.2
(-3)
P 		23
B 33.1
(3)
P 		33.1
(3)
P 		32.5
(2.8)
P 		14.3
(-3)
P 		19
C 30.6
(-1.1)
P 		30.3
(-1.1)
P 		57.1
(3)
P 		18.1
(-3)
P 		39
avr 32.2
(0.8) 		30.1
(0.3) 		42.1
(3) 		15.2
(-3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 13.3
(-3)
P 		36.7
(3)
P 		29.9
(1.3)
P 		32.1
(1.8)
P 		25.8
(0.2)
P 		22.8
(-0.6)
P 		23
B 19.8
(-2.5)
P 		25
(-1.5)
P 		17.5
(-3)
P 		20.9
(-2.3)
P 		42.3
(2.1)
P 		46.6
(3)
P 		29
C 31
(2)
P 		22.7
(-1.2)
P 		28.5
(1.1)
P 		17.9
(-3)
P 		33.5
(3)
P 		30.9
(2)
P 		16
avr 21.4
(-3) 		28.1
(0.2) 		25.3
(-1.1) 		23.6
(-1.9) 		33.9
(3) 		33.4
(2.8) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188426_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11541
Sequence Type Exemplar sequence
Representative Public ID K11G9.2 NCBI
Target Description K11G9.2 /REP_DB=WormBase Gene ID /WP=CE07375 /TR=Q23009 /GB=AAB04975.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=esterase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072291(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072291 NCBI Caenorhabditis elegans K11G9.2 (esterase) mRNA, complete cds. 11/11 None
SNAP00000025343 ENSEMBL cdna:SNAP chromosome:CEL140:V:6677748:6678920:1 11/11 None
GENEFINDER00000025349 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6676862:6678920:1 11/11 None
K11G9.2 ENSEMBL cdna:known chromosome:CEL140:V:6676862:6678920:1 gene:K11G9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6676862-6678921(+) 100.0 100.0
Public Domain and Genome References
Gene Title esterase
Ensembl K11G9.2
Entrez Gene 187304 Entrez gene
SwissProt Q23009 EMBL-EBI
WormBase CE35341 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1641650_AT Esterase-5 dm
DROSGENOME1:152410_AT Esterase-5 dm
Protein Similarities
Method ID Description E-Value
blast AAB04975 Hypothetical protein K11G9.2 [Caenorhabditis elegans] ref|NP_504692.2| K11G9.2 [Caenorhabditis elegans] 0.0
blast AAB04975 Hypothetical protein K11G9.2 [Caenorhabditis elegans] ref|NP_504692.2| K11G9.2 [Caenorhabditis elegans] 1.0E-175
blast CAE65401 Hypothetical protein CBG10352 [Caenorhabditis briggsae] 1.0E-166
blast CAE71929 Hypothetical protein CBG18992 [Caenorhabditis briggsae] 1.0E-164
blast CAE65401 Hypothetical protein CBG10352 [Caenorhabditis briggsae] 1.0E-158
blast AAB04976 Hypothetical protein K11G9.1 [Caenorhabditis elegans] ref|NP_504693.1| K11G9.1 [Caenorhabditis elegans] 1.0E-156
Protein Domains
Database ID Description E-Value
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 1.1E-100
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 3.0E-69
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 8.8E-65
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:188426_AT
ttggacattctgtgtacaacgctggagttctactgtctgccgaaagtttagctcgagctg
ggaactgtgtgtatttctatgtattcgatttctggaacccagatggttttggacctgttg
ggagcattgtgccatttaaaggtgctgcacattgcagtgaactacgttacattattggtg
aaggagtgtacagcaaatttgatgcaaatgaaaaagatttgaaaatgatggaatatatga
ctactatgttcactaattttgcaaaatatggaaatcctaatatacccggcgtgacaaact
gggaaacttacaccgaaggaagtcgacattttcacattgattcaactgacagtgaaatga
aagacagttttcaagaaaaccgctgccaatttttga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGGACATTCTGTGTACAACGCTGG 402 651 1205 Antisense
ACAACGCTGGAGTTCTACTGTCTGC 319 113 1220 Antisense
GTCTGCCGAAAGTTTAGCTCGAGCT 499 471 1239 Antisense
AGCTCGAGCTGGGAACTGTGTGTAT 574 79 1254 Antisense
ATGTATTCGATTTCTGGAACCCAGA 100 49 1283 Antisense
AACCCAGATGGTTTTGGACCTGTTG 59 137 1300 Antisense
GGACCTGTTGGGAGCATTGTGCCAT 78 521 1315 Antisense
GACTACTATGTTCACTAATTTTGCA 628 373 1443 Antisense
GAAATCCTAATATACCCGGCGTGAC 585 349 1475 Antisense
AAGTCGACATTTTCACATTGATTCA 380 157 1524 Antisense
CAAGAAAACCGCTGCCAATTTTTGA 208 147 1576 Antisense
Sequence Source Affymetrix Proprietary Database