[Home] | [Total List]

[188425_at] esterase

Description K11G9.3 /REP_DB=WormBase Gene ID /WP=CE07376 /TR=Q23008 /GB=AAB04974.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=esterase
Cluster 6grp_total > 10      4grp_total > 21      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 70.6
(-3)
A 		90.6
(0.5)
A 		104.7
(3)
A 		94.7
(1.2)
A 		34
B 88.9
(-0.1)
A 		108.2
(3)
A 		71.4
(-3)
A 		91.7
(0.3)
A 		37
C 143.4
(2.8)
A 		76.1
(-3)
A 		82.3
(-2.5)
A 		145.3
(3)
P 		69
avr 101
(0.6) 		91.6
(-1.7) 		86.1
(-3) 		110.6
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 55.9
(-3)
A 		121.9
(3)
A 		87.1
(-0.2)
A 		73.9
(-1.4)
A 		74.4
(-1.3)
A 		59.9
(-2.6)
A 		66
B 34.9
(-3)
A 		49.8
(-1.2)
A 		51.2
(-1.1)
A 		85.7
(3)
M 		56.6
(-0.4)
A 		47
(-1.6)
A 		51
C 67.1
(-0.7)
A 		114.2
(3)
M 		58.4
(-1.4)
A 		60.3
(-1.2)
A 		37.3
(-3)
A 		70.4
(-0.4)
A 		77
avr 52.6
(-3) 		95.3
(3) 		65.6
(-1.2) 		73.3
(-0.1) 		56.1
(-2.5) 		59.1
(-2.1) 		43
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 25.7
(2.2)
A 		19.7
(-0.4)
A 		27.4
(3)
A 		13.9
(-3)
A 		14
B 28.4
(3)
A 		26.7
(2.1)
A 		16.6
(-3)
A 		19.5
(-1.5)
A 		12
C 47.5
(3)
A 		21.9
(-3)
A 		28.7
(-1.4)
A 		24.5
(-2.4)
P 		26
avr 33.9
(3) 		22.8
(-1.6) 		24.2
(-1) 		19.3
(-3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 10.3
(-3)
A 		43.4
(3)
A 		19
(-1.4)
A 		18.7
(-1.5)
A 		22.5
(-0.8)
A 		14.6
(-2.2)
A 		33
B 12.1
(-3)
A 		16.6
(-0.5)
A 		12.4
(-2.8)
A 		22.7
(2.8)
M 		23
(3)
A 		17.5
(-0)
A 		11
C 24.9
(0.4)
A 		34.9
(3)
M 		14.9
(-2.3)
A 		12.1
(-3)
A 		12.1
(-3)
A 		23.6
(0)
A 		23
avr 15.8
(-2.9) 		31.6
(3) 		15.4
(-3) 		17.8
(-2.1) 		19.2
(-1.6) 		18.6
(-1.8) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188425_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11421
Sequence Type Exemplar sequence
Representative Public ID K11G9.3 NCBI
Target Description K11G9.3 /REP_DB=WormBase Gene ID /WP=CE07376 /TR=Q23008 /GB=AAB04974.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=esterase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072290(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072290 NCBI Caenorhabditis elegans K11G9.3 (esterase) mRNA, complete cds. 11/11 None
SNAP00000025341 ENSEMBL cdna:SNAP chromosome:CEL140:V:6672650:6674360:1 10/11 None
GENEFINDER00000025353 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6673050:6676451:1 11/11 None
K11G9.3 ENSEMBL cdna:known chromosome:CEL140:V:6673050:6674592:1 gene:K11G9.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6673050-6674593(+) 100.0 100.0
Public Domain and Genome References
Gene Title esterase
Ensembl K11G9.3
Entrez Gene 187305 Entrez gene
SwissProt Q23008 EMBL-EBI
WormBase CE07376 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB04974 Hypothetical protein K11G9.3 [Caenorhabditis elegans] ref|NP_504691.1| K11G9.3 [Caenorhabditis elegans] 0.0
blast CAE71927 Hypothetical protein CBG18990 [Caenorhabditis briggsae] 0.0
blast CAE65401 Hypothetical protein CBG10352 [Caenorhabditis briggsae] 1.0E-171
blast CAE65401 Hypothetical protein CBG10352 [Caenorhabditis briggsae] 1.0E-160
Protein Domains
Database ID Description E-Value
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 1.0E-126
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:188425_AT
gccgcccctagaagcgctaaaactatatgtgaatgaatattataagaaagatactggaga
tcattttgaagctacacgaaataaaattattgaattttattcacgaaatgttgaggatac
cgatgagaaaagtaccaaagagcgattgattgattttgtgggtgatgctctattcaccgc
tggagtttttgataacgccaagaattgcctcaagcatggtaataacgtatggctctatat
tttcgattattgcaacccttctggattcgggaatcaggaagaatttatgacattcgttgc
cccaacgcattgtacagatttacgttatgttcttggagaaggactgtacagtgatttcca
gccaacagaggaagaacataaaatgattgaaaaaatgactacgatctactccaatttcgc
aaaatacggaaacccaaacgaacatgggtcatcggaatgggaaaagttcacattggacaa
tccacgtaggcatttccaaatttcgtatccacgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCGCCCCTAGAAGCGCTAAAACTA 89 285 684 Antisense
TTGATTTTGTGGGTGATGCTCTATT 590 705 833 Antisense
ATGCTCTATTCACCGCTGGAGTTTT 425 43 848 Antisense
GATAACGCCAAGAATTGCCTCAAGC 470 423 874 Antisense
ATTTTCGATTATTGCAACCCTTCTG 92 15 922 Antisense
GCAACCCTTCTGGATTCGGGAATCA 148 315 935 Antisense
ATTTATGACATTCGTTGCCCCAACG 428 15 966 Antisense
GTTGCCCCAACGCATTGTACAGATT 121 441 979 Antisense
GTACAGTGATTTCCAGCCAACAGAG 393 459 1029 Antisense
GACTACGATCTACTCCAATTTCGCA 243 373 1080 Antisense
GCATTTCCAAATTTCGTATCCACGT 406 305 1173 Antisense
Sequence Source Affymetrix Proprietary Database