[Home] | [Total List]

[188422_at] Thiolases

Description F53A2.7 /REP_DB=WormBase Gene ID /WP=CE16099 /TR=O45552 /GB=CAB04455.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Thiolases
Cluster 6grp_highest_10_10 > 40      6grp_high1_10_10 > 06      4grp_highest_8_8 > 16      4grp_high_8_8 > 52      6grp_highest_nonorm > 13      6grp_total > 04      4grp_total > 59      6grp_highest_sub > De      6grp_high1_sub > De      6grp_rule_based > S1      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2197
1 2 3 4 range
A 2671.8
(1.5)
P 		3008.4
(2.7)
P 		3106.9
(3)
P 		1397.9
(-3)
P 		1709
B 2844.8
(1.6)
P 		3285.4
(3)
P 		3148.3
(2.6)
P 		1424.9
(-3)
P 		1861
C 2902.3
(1.5)
P 		3444.3
(3)
P 		3191.1
(2.3)
P 		1247.2
(-3)
P 		2197
avr 2806.3
(1.6) 		3246
(3) 		3148.8
(2.7) 		1356.7
(-3) 		1889

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1964
1 2 3 4 5 6 range
A 2924
(2.6)
P 		2276.2
(-0.1)
P 		3026
(3)
P 		2384.1
(0.3)
P 		2227.4
(-0.3)
P 		1580.7
(-3)
P 		1445
B 3545
(3)
P 		2949.9
(0.4)
P 		2263.6
(-2.6)
P 		2552.2
(-1.3)
P 		2599.8
(-1.1)
P 		2173.9
(-3)
P 		1371
C 3002
(2.7)
P 		3053.3
(3)
P 		2131.8
(-1.7)
P 		2350.9
(-0.6)
P 		1886.7
(-3)
P 		2340.8
(-0.7)
P 		1167
avr 3157
(3) 		2759.8
(0.9) 		2473.8
(-0.6) 		2429.1
(-0.9) 		2238
(-1.9) 		2031.8
(-3) 		1125
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 908
1 2 3 4 range
A 972.8
(3)
P 		653
(0.5)
P 		812.2
(1.7)
P 		204.6
(-3)
P 		768
B 907.2
(3)
P 		811.4
(2)
P 		729.5
(1.2)
P 		303.7
(-3)
P 		604
C 960.7
(2)
P 		990.3
(2.2)
P 		1112.2
(3)
P 		210.3
(-3)
P 		902
avr 946.9
(3) 		818.2
(1.9) 		884.6
(2.5) 		239.5
(-3) 		707

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 849
1 2 3 4 5 6 range
A 539
(-0.8)
P 		809.5
(3)
P 		659
(0.9)
P 		604.7
(0.1)
P 		672.1
(1.1)
P 		384.9
(-3)
P 		425
B 1233.5
(3)
P 		981.9
(0.8)
P 		549.7
(-3)
P 		676
(-1.9)
P 		1056.3
(1.4)
P 		810.7
(-0.7)
P 		684
C 1112.7
(3)
P 		931.6
(1.3)
P 		542.6
(-2.3)
P 		472.8
(-3)
P 		610.5
(-1.7)
P 		783.6
(-0.1)
P 		640
avr 961.7
(3) 		907.7
(2.1) 		583.8
(-3) 		584.5
(-3) 		779.6
(0.1) 		659.7
(-1.8) 		378
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188422_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7403
Sequence Type Exemplar sequence
Representative Public ID F53A2.7 NCBI
Target Description F53A2.7 /REP_DB=WormBase Gene ID /WP=CE16099 /TR=O45552 /GB=CAB04455.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Thiolases
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067351(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067351 NCBI Caenorhabditis elegans F53A2.7 (Thiolases) mRNA, complete cds. 11/11 A 
SNAP00000020111 ENSEMBL cdna:SNAP chromosome:CEL140:III:13344548:13346205:1 9/11 None
GENEFINDER00000020115 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:13344548:13350313:1 11/11 None
F53A2.7.1 ENSEMBL cdna:known chromosome:CEL140:III:13344433:13346499:1 gene:F53A2.7 11/11 A 
F53A2.7.3 ENSEMBL cdna:known chromosome:CEL140:III:13344452:13346499:1 gene:F53A2.7 11/11 None
F53A2.7.2 ENSEMBL cdna:known chromosome:CEL140:III:13344453:13346499:1 gene:F53A2.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:13344470-13346495(+) 98.42 100.0
Public Domain and Genome References
Gene Title Thiolases
Ensembl F53A2.7
Entrez Gene 176756 Entrez gene
SwissProt O45552 EMBL-EBI
WormBase CE16099 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1636180_AT yippee interacting protein 2 dm
DROSGENOME1:153437_AT yippee interacting protein 2 dm
CHICKEN:GGAAFFX.11719.1.S1_S_AT acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase) gga
HG-FOCUS:202003_S_AT acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase) hs
HG-U133A:202003_S_AT acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase) hs
HG-U133_PLUS_2:202003_S_AT acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase) hs
HG-U133A_2:202003_S_AT acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase) hs
HUGENEFL:D16294_AT acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase) hs
U133_X3P:G5174428_3P_A_AT acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase) hs
U133_X3P:HS.32500.0.A1_3P_AT acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase) hs
HG-U133A_2:202002_AT acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase) hs
HG-U133_PLUS_2:202002_AT acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase) hs
HG-U133A:202002_AT acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase) hs
HG-U95AV2:41530_AT acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase) hs
HG-U95E:91157_AT acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase) hs
MOE430A:1455061_A_AT acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase) mm
MOUSE430A_2:1455061_A_AT acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase) mm
MOUSE430_2:1455061_A_AT acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase) mm
MU11KSUBA:C79215_RC_S_AT acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase) mm
MG-U74AV2:95064_AT acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase) mm
MOE430A:1428146_S_AT acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase) mm
MOUSE430A_2:1428146_S_AT acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase) mm
MOUSE430_2:1428146_S_AT acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase) mm
MOE430A:1428145_AT acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase) mm
MOUSE430A_2:1428145_AT acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase) mm
MOUSE430_2:1428145_AT acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase) mm
MU19KSUBA:TC15807_AT Acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase), mRNA (cDNA clone MGC:18807 IMAGE:4195488) mm
MU19KSUBA:TC15810_S_AT Acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase), mRNA (cDNA clone MGC:18807 IMAGE:4195488) mm
MU19KSUBC:TC36679_I_AT Acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase), mRNA (cDNA clone MGC:18807 IMAGE:4195488) mm
MU19KSUBC:TC36679_S_AT Acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase), mRNA (cDNA clone MGC:18807 IMAGE:4195488) mm
MU19KSUBC:TC36680_S_AT Acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase), mRNA (cDNA clone MGC:18807 IMAGE:4195488) mm
RG-U34A:X05341_AT acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase) rn
RAE230A:1386880_AT acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase) rn
RAT230_2:1386880_AT acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase) rn
Protein Similarities
Method ID Description E-Value
blast CAB04455 Hypothetical protein F53A2.7 [Caenorhabditis elegans] ref|NP_499752.1| F53A2.7 [Caenorhabditis elegans] 0.0
blast CAE56546 Hypothetical protein CBG24278 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002155 EMBL-EBI Thiolase 1.9E-70
Pfam IPR002155 EMBL-EBI Thiolase 1.4E-115
Pfam IPR002155 EMBL-EBI Thiolase 1.9E-70
Pfam IPR002155 EMBL-EBI Thiolase 4.6E-116
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000020115 1 481-503
Sequence
Target Sequence 
>C. ELEGANS:188422_AT
tctggaatttctgacggagccgctgctcttgtggttgccggtgaagacagtgtgaagtcg
aagaatctgaaaccgttggctcgagttgttgcctattctgctgtcggttgtgatccaacc
atcatgggaatcggaccggctccagctattcgggaagttctcaagaagagtgggctcaag
attggagatattgatatcttcgaggtaaatgaggcgttcgctccacaagctctcgccgtt
caacgtgaactcggaatcccaatggaaaagctgaatgtcaatggtggagccatcgctttg
ggccatccactcgccgcatctggagccagaatttccacgcatattgtgcacgagcttcac
cgccgcaacgtcaagtacggaatcggatcggcttgcattggaggaggacaaggaatcgca
attctcttcgaaaaaatagaaatgaaagttttatctaaaaaaaaatttttttctgaaaaa
aaccaaaaatctgcaaacactagcacgcaatctcgcgtctctgacgccaattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTGGAATTTCTGACGGAGCCGCTG 319 605 757 Antisense
TGCTCTTGTGGTTGCCGGTGAAGAC 392 579 780 Antisense
GAATCTGAAACCGTTGGCTCGAGTT 409 323 819 Antisense
TGGCTCGAGTTGTTGCCTATTCTGC 612 539 833 Antisense
TATTCTGCTGTCGGTTGTGATCCAA 274 665 850 Antisense
ACCATCATGGGAATCGGACCGGCTC 358 85 874 Antisense
GGCTCCAGCTATTCGGGAAGTTCTC 672 537 894 Antisense
TAAATGAGGCGTTCGCTCCACAAGC 179 639 962 Antisense
TCTCGCCGTTCAACGTGAACTCGGA 615 607 987 Antisense
AACACTAGCACGCAATCTCGCGTCT 119 135 1252 Antisense
AATCTCGCGTCTCTGACGCCAATTC 86 171 1265 Antisense
Sequence Source Affymetrix Proprietary Database