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[188420_at]

Description ZK512.3 /REP_DB=WormBase Gene ID /WP=CE00409 /GEN=ced-11 /TR=SW:P34641 /GB=CAA80145.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 43      6grp_high1_10_10 > 33      6grp_highest_nonorm > 90      6grp_total > 02      4grp_total > 56      6grp_highest_sub > 02      6grp_cgc > 52      6grp_high1_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 76.8
(-3)
P 		87.3
(1.6)
A 		90.4
(3)
P 		86
(1.1)
A 		14
B 103.6
(-0.1)
P 		89.1
(-1.4)
P 		138.4
(3)
P 		70.6
(-3)
A 		68
C 120.2
(2.3)
P 		108
(-1.2)
A 		122.7
(3)
P 		101.8
(-3)
A 		21
avr 100.2
(-0.3) 		94.8
(-1.3) 		117.2
(3) 		86.1
(-3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 121
1 2 3 4 5 6 range
A 98.9
(-2.1)
P 		199.5
(3)
P 		140.8
(0)
P 		94.3
(-2.3)
P 		101.2
(-2)
P 		81.2
(-3)
P 		118
B 138.4
(3)
P 		122.4
(1.1)
P 		115.1
(0.2)
P 		112.4
(-0.1)
P 		116.3
(0.3)
P 		88.8
(-3)
P 		50
C 110
(-1.2)
P 		171.3
(2.4)
P 		88
(-2.5)
P 		180.8
(3)
P 		106.5
(-1.4)
P 		78.7
(-3)
P 		102
avr 115.8
(-0.6) 		164.4
(3) 		114.6
(-0.7) 		129.2
(0.4) 		108
(-1.2) 		82.9
(-3) 		82
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 28
(3)
P 		18.9
(-0.5)
A 		23.6
(1.3)
P 		12.6
(-3)
A 		15
B 33
(3)
P 		22
(-0.7)
P 		32.1
(2.7)
P 		15
(-3)
A 		18
C 39.8
(2.3)
P 		31.1
(0.3)
A 		42.7
(3)
P 		17.2
(-3)
A 		26
avr 33.6
(3) 		24
(-0.1) 		32.8
(2.7) 		14.9
(-3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 18.2
(-3)
P 		70.9
(3)
P 		30.7
(-1.6)
P 		23.9
(-2.4)
P 		30.5
(-1.6)
P 		19.8
(-2.8)
P 		53
B 48.2
(3)
P 		40.7
(0.8)
P 		27.9
(-3)
P 		29.8
(-2.4)
P 		47.3
(2.7)
P 		33.1
(-1.5)
P 		20
C 40.8
(0.7)
P 		52.3
(3)
P 		22.4
(-3)
P 		36.3
(-0.2)
P 		34.5
(-0.6)
P 		26.3
(-2.2)
P 		30
avr 35.7
(-1) 		54.6
(3) 		27
(-2.9) 		30
(-2.2) 		37.4
(-0.7) 		26.4
(-3) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188420_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7405
Sequence Type Exemplar sequence
Representative Public ID ZK512.3 NCBI
Target Description ZK512.3 /REP_DB=WormBase Gene ID /WP=CE00409 /GEN=ced-11 /TR=SW:P34641 /GB=CAA80145.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066620(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066620 NCBI Caenorhabditis elegans CEll Death abnormality family member (ced-11) (ced-11) mRNA, complete cds. 11/11 A 
SNAP00000002529 ENSEMBL cdna:SNAP chromosome:CEL140:III:9119465:9124958:1 11/11 None
GENEFINDER00000002546 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9119465:9130408:1 11/11 None
ZK512.3 ENSEMBL cdna:known chromosome:CEL140:III:9119465:9125059:1 gene:ZK512.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9119460-9124954(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol ced-11
Ensembl ZK512.3
Entrez Gene 176288 Entrez gene
SwissProt P34641 EMBL-EBI
WormBase CE00409 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA80145 Hypothetical protein ZK512.3 [Caenorhabditis elegans] ref|NP_499021.1| CEll Death abnormality family member (ced-11) [Caenorhabditis elegans] sp|P34641|CED11_CAEEL Ced-11 protein 0.0
blast CAE62770 Hypothetical protein CBG06939 [Caenorhabditis briggsae] 0.0
blast CAC81659 putative TRP homologous cation channel protein [Caenorhabditis elegans] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499021.1 6 621-643,755-777,821-843,856-876,896-918,981-1003
ZK512.3 6 621-643,755-777,821-843,856-876,896-918,981-1003
SNAP00000002529 6 621-643,755-777,821-843,856-876,896-918,981-1003
GENEFINDER00000002546 6 621-643,755-777,821-843,856-876,896-918,981-1003
Sequence
Target Sequence 
>C. ELEGANS:188420_AT
aagccgtcaggcaaatgatgttactagtagtaatgataaatgttggaagctctcagctgc
cggcttcccattgaatccgaatggtcgaactggaatggctggaagaggaaatcatccgag
atttggtgctaatcgacgttgttattatgtcgttttgagtggtggagttgaagcgaaatg
tcaagttctagttgatagtcagaagaatattccaaatgaatggcatctggagaactcgtc
gaaagatgaacatctgacatctattttgaagatgattggaatttcagattctgacgctca
tatgttttcaatgcgacgtttggatagctcaattatcactgcggacaaaagaataccatc
caatgacacgag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGCCGTCAGGCAAATGATGTTACT 46 149 3684 Antisense
AAATGTTGGAAGCTCTCAGCTGCCG 54 121 3721 Antisense
CCGGCTTCCCATTGAATCCGAATGG 702 265 3743 Antisense
GAATGGTCGAACTGGAATGGCTGGA 599 331 3762 Antisense
ATTTGGTGCTAATCGACGTTGTTAT 466 17 3804 Antisense
TGTCGTTTTGAGTGGTGGAGTTGAA 270 553 3831 Antisense
GAATGGCATCTGGAGAACTCGTCGA 191 333 3901 Antisense
TTTCAGATTCTGACGCTCATATGTT 287 673 3965 Antisense
GACGCTCATATGTTTTCAATGCGAC 389 381 3976 Antisense
AATGCGACGTTTGGATAGCTCAATT 385 167 3993 Antisense
AAAGAATACCATCCAATGACACGAG 482 123 4031 Antisense
Sequence Source Affymetrix Proprietary Database