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[188415_at]

Description F49C12.8 /REP_DB=WormBase Gene ID /WP=CE03368 /GEN=rpn-7 /TR=SW:Q20585 /GB=CAA92512.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 39      6grp_high1_10_10 > 82      4grp_highest_8_8 > 10      4grp_high_8_8 > 55      6grp_highest_nonorm > 46      6grp_total > 84      4grp_total > 56      6grp_highest_sub > 04      6grp_cgc > 86      6grp_high1_sub > 04      6grp_cgc_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2544
1 2 3 4 range
A 2956.8
(-3)
P 		3528
(-1.4)
P 		5053
(3)
P 		2956
(-3)
P 		2097
B 2946.7
(-3)
P 		4237.6
(0.9)
P 		4910.2
(3)
P 		2987.3
(-2.9)
P 		1964
C 2626.7
(-2.6)
P 		4295.2
(2.6)
P 		4426.3
(3)
P 		2508.7
(-3)
P 		1918
avr 2843.4
(-2.9) 		4020.3
(0.6) 		4796.5
(3) 		2817.3
(-3) 		1979

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2032
1 2 3 4 5 6 range
A 2858.4
(-3)
P 		2990.8
(-2.4)
P 		2991.3
(-2.4)
P 		4206
(3)
P 		3519.7
(-0.1)
P 		3468.7
(-0.3)
P 		1348
B 2824.1
(-1.8)
P 		2610.8
(-3)
P 		2735.2
(-2.3)
P 		3580.2
(2.4)
P 		3686.2
(3)
P 		3022.7
(-0.7)
P 		1075
C 2784.2
(-1.1)
P 		2174.3
(-3)
P 		4133.5
(3)
P 		3596.4
(1.4)
P 		3815.7
(2)
P 		2758.3
(-1.2)
P 		1959
avr 2822.2
(-1.9) 		2592
(-3) 		3286.7
(0.5) 		3794.2
(3) 		3673.9
(2.4) 		3083.2
(-0.5) 		1202
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1120
1 2 3 4 range
A 1076.6
(1.3)
P 		765.8
(-0.7)
P 		1320.9
(3)
P 		432.7
(-3)
P 		888
B 939.7
(0.6)
P 		1046.6
(1.9)
P 		1137.8
(3)
P 		636.6
(-3)
P 		501
C 869.5
(-0.6)
P 		1234.9
(1.4)
P 		1542.7
(3)
P 		423
(-3)
P 		1120
avr 961.9
(0.3) 		1015.8
(0.7) 		1333.8
(3) 		497.4
(-3) 		836

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 971
1 2 3 4 5 6 range
A 526.9
(-3)
P 		1063.7
(3)
P 		651.4
(-1.6)
P 		1066.7
(3)
P 		1062.1
(2.9)
P 		844.5
(0.5)
P 		540
B 982.6
(-0.7)
P 		869
(-1.5)
P 		664.2
(-3)
P 		948.3
(-1)
P 		1497.6
(3)
P 		1127.2
(0.3)
P 		833
C 1032
(0.9)
P 		663.5
(-3)
P 		1052
(1.1)
P 		723.2
(-2.4)
P 		1234.7
(3)
P 		923.4
(-0.3)
P 		571
avr 847.2
(-2.3) 		865.4
(-2) 		789.2
(-3) 		912.7
(-1.4) 		1264.8
(3) 		965
(-0.8) 		476
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188415_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8652
Sequence Type Exemplar sequence
Representative Public ID F49C12.8 NCBI
Target Description F49C12.8 /REP_DB=WormBase Gene ID /WP=CE03368 /GEN=rpn-7 /TR=SW:Q20585 /GB=CAA92512.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069231(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069231 NCBI Caenorhabditis elegans proteasome Regulatory Particle, Non-ATPase-like family member (rpn-7) (rpn-7) mRNA, complete cds. 11/11 None
SNAP00000032697 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9316620:9317947:1 11/11 None
GENEFINDER00000032718 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9316620:9317947:1 11/11 None
F49C12.8.2 ENSEMBL cdna:known chromosome:CEL140:IV:9316614:9318017:1 gene:F49C12.8 11/11 None
F49C12.8.1 ENSEMBL cdna:known chromosome:CEL140:IV:9316616:9318063:1 gene:F49C12.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9316625-9317953(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol rpn-7
Ensembl F49C12.8
Entrez Gene 177753 Entrez gene
SwissProt Q20585 EMBL-EBI
WormBase CE03368 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:13450_AT 26S proteasome regulatory subunit, putative (RPN7) at
ATH1-121501:254086_AT 26S proteasome regulatory subunit, putative (RPN7) at
CANINE_2:CFA.20955.1.S1_S_AT similar to 26S proteasome non-ATPase regulatory subunit 6 (26S proteasome regulatory subunit S10) (p42A) (Proteasome regulatory particle subunit p44S10) (Phosphonoformate immuno-associated protein 4) (Breast cancer associated protein SGA-113M)... cfa
DROSOPHILA_2:1633594_AT dm
DROSGENOME1:141231_AT dm
CHICKEN:GGA.11679.1.S1_AT proteasome (prosome, macropain) 26S subunit, non-ATPase, 6 gga
CHICKEN:GGA.12358.2.S1_AT proteasome (prosome, macropain) 26S subunit, non-ATPase, 6 gga
HG-U133_PLUS_2:202753_AT proteasome (prosome, macropain) 26S subunit, non-ATPase, 6 hs
HG-U133A_2:202753_AT proteasome (prosome, macropain) 26S subunit, non-ATPase, 6 hs
HG-U133A:202753_AT proteasome (prosome, macropain) 26S subunit, non-ATPase, 6 hs
HUGENEFL:D14663_AT proteasome (prosome, macropain) 26S subunit, non-ATPase, 6 hs
U133_X3P:G7661913_3P_S_AT proteasome (prosome, macropain) 26S subunit, non-ATPase, 6 hs
U133_X3P:G7661913_3P_AT proteasome (prosome, macropain) 26S subunit, non-ATPase, 6 hs
U133_X3P:202753_3P_AT proteasome (prosome, macropain) 26S subunit, non-ATPase, 6 hs
HG-U95AV2:34680_S_AT proteasome (prosome, macropain) 26S subunit, non-ATPase, 6 hs
HG-U133_PLUS_2:232284_AT Proteasome (prosome, macropain) 26S subunit, non-ATPase, 6 hs
HG-U133B:232284_AT Proteasome (prosome, macropain) 26S subunit, non-ATPase, 6 hs
U133_X3P:HS2.350939.1.A1_3P_AT Proteasome (prosome, macropain) 26S subunit, non-ATPase, 6 hs
U133_X3P:HS.282421.0.S1_3P_AT Proteasome (prosome, macropain) 26S subunit, non-ATPase, 6 hs
HG-U133_PLUS_2:1555884_AT Proteasome (prosome, macropain) 26S subunit, non-ATPase, 6 hs
HG-U95B:43606_AT Proteasome (prosome, macropain) 26S subunit, non-ATPase, 6 hs
HG-U133_PLUS_2:237240_AT Proteasome (prosome, macropain) 26S subunit, non-ATPase, 6 hs
HG-U133B:237240_AT Proteasome (prosome, macropain) 26S subunit, non-ATPase, 6 hs
HG-U95D:79997_AT Proteasome (prosome, macropain) 26S subunit, non-ATPase, 6 hs
HG-U95E:83337_AT Proteasome (prosome, macropain) 26S subunit, non-ATPase, 6 hs
MU11KSUBA:AA555935_AT proteasome (prosome, macropain) 26S subunit, non-ATPase, 6 mm
MU11KSUBA:AA555935_G_AT proteasome (prosome, macropain) 26S subunit, non-ATPase, 6 mm
MG-U74AV2:160239_AT proteasome (prosome, macropain) 26S subunit, non-ATPase, 6 mm
MOE430A:1423696_A_AT proteasome (prosome, macropain) 26S subunit, non-ATPase, 6 mm
MOUSE430A_2:1423696_A_AT proteasome (prosome, macropain) 26S subunit, non-ATPase, 6 mm
MOUSE430_2:1423696_A_AT proteasome (prosome, macropain) 26S subunit, non-ATPase, 6 mm
MOE430A:1423697_AT proteasome (prosome, macropain) 26S subunit, non-ATPase, 6 mm
MOUSE430A_2:1423697_AT proteasome (prosome, macropain) 26S subunit, non-ATPase, 6 mm
MOUSE430_2:1423697_AT proteasome (prosome, macropain) 26S subunit, non-ATPase, 6 mm
MU19KSUBB:TC31150_AT Proteasome (prosome, macropain) 26S subunit, non-ATPase, 6 (Psmd6), mRNA mm
RG-U34C:RC_AI145614_AT proteasome regulatory particle subunit p44S10 rn
RAE230A:1371851_AT proteasome regulatory particle subunit p44S10 rn
RAT230_2:1371851_AT proteasome regulatory particle subunit p44S10 rn
Protein Similarities
Method ID Description E-Value
blast CAA92512 Hypothetical protein F49C12.8 [Caenorhabditis elegans] ref|NP_501632.1| proteasome Regulatory Particle, Non-ATPase-like family member (rpn-7) [Caenorhabditis elegans] sp|Q20585|PSD6_CAEEL 26S proteasome non-ATPase regulatory subunit 6 (26S proteasome regulatory subunit rpn-7) 0.0
blast CAE74055 Hypothetical protein CBG21707 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000717 EMBL-EBI Proteasome component region PCI 1.5E-28
Sequence
Target Sequence 
>C. ELEGANS:188415_AT
gtctgttcgtgattttgctggagccgctgatttgttccttgaagctgtgccaacattcgg
atcatacgagctcatgacatatgaaaacttgattctctacactgtcatcaccacaacctt
tgctttggacagaccagaccttcgtaccaaggttattcgttgcaatgaagttcaagaaca
gctgaccggagggggactcaatggaacattgattccagttcgtgagtatctcgaatcata
ctatgattgtcactacgatcgtttcttcattcagttggccgctcttgaaagcgagagatt
caagtttgatcgctatctatcgccacacttcaactattactctcgtggaatgcgccatcg
cgcttacgaacaatttttgactccttacaagactgtacgtatcgatatgatggccaagga
ttttggtgtttcccgtgctttcatcgaccgcgaattgcaccgtctgattgcgactg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCTGTTCGTGATTTTGCTGGAGCC 566 471 621 Antisense
AGCCGCTGATTTGTTCCTTGAAGCT 678 81 642 Antisense
GAAGCTGTGCCAACATTCGGATCAT 290 343 661 Antisense
TTGGACAGACCAGACCTTCGTACCA 479 653 745 Antisense
AGAACAGCTGACCGGAGGGGGACTC 85 71 795 Antisense
GATCGTTTCTTCATTCAGTTGGCCG 149 415 877 Antisense
AAGTTTGATCGCTATCTATCGCCAC 167 157 922 Antisense
CGCCACACTTCAACTATTACTCTCG 362 257 941 Antisense
TGGAATGCGCCATCGCGCTTACGAA 230 547 966 Antisense
TGCTTTCATCGACCGCGAATTGCAC 451 579 1056 Antisense
GAATTGCACCGTCTGATTGCGACTG 485 323 1072 Antisense
Sequence Source Affymetrix Proprietary Database