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[188413_s_at]

Description F15A4.8 /REP_DB=WormBase Gene ID /WP=CE15845 /TR=O17813 /GB=CAB02942.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=chitinase
Cluster 6grp_total > 62      4grp_total > 18      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 24.3
(-3)
A 		61.7
(0.1)
A 		30.7
(-2.5)
A 		97.6
(3)
M 		73
B 26
(-3)
A 		46.5
(1.1)
A 		34.4
(-1.3)
A 		56.2
(3)
A 		30
C 43.5
(-0.9)
A 		61.2
(0.1)
A 		7.6
(-3)
A 		112.4
(3)
A 		105
avr 31.3
(-2.3) 		56.5
(0) 		24.2
(-3) 		88.7
(3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 190
1 2 3 4 5 6 range
A 93
(-0.9)
A 		77
(-1.4)
A 		177.1
(1.8)
P 		213
(3)
P 		122.4
(0.1)
A 		26.8
(-3)
A 		186
B 32.1
(-2.8)
A 		67.4
(-1.3)
A 		175.2
(3)
P 		128.3
(1.1)
P 		98.3
(-0.1)
P 		25.9
(-3)
A 		149
C 23.1
(-3)
A 		44.5
(-2.2)
A 		186.4
(2.9)
P 		189.8
(3)
P 		112
(0.2)
P 		31
(-2.7)
A 		167
avr 49.4
(-2.1) 		63
(-1.6) 		179.6
(3) 		177
(2.9) 		110.9
(0.3) 		27.9
(-3) 		152
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 8.9
(-2.1)
A 		13.4
(2.1)
A 		8
(-3)
A 		14.3
(3)
M 		6
B 8.3
(-2.6)
A 		11.5
(2.3)
A 		8
(-3)
A 		12
(3)
A 		4
C 14.4
(1.3)
A 		17.6
(2.5)
A 		2.6
(-3)
A 		19
(3)
A 		16
avr 10.5
(-0.1) 		14.2
(2.4) 		6.2
(-3) 		15.1
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 17.1
(-1.7)
A 		27.4
(-0.4)
A 		38.6
(1.1)
P 		54
(3)
P 		36.9
(0.8)
A 		6.5
(-3)
A 		48
B 11.2
(-2.7)
A 		22.4
(-0.7)
A 		42.5
(3)
P 		34
(1.4)
P 		39.9
(2.5)
P 		9.7
(-3)
A 		33
C 8.6
(-3)
A 		13.6
(-2.2)
A 		47.4
(3)
P 		38.2
(1.6)
P 		36.2
(1.3)
P 		10.4
(-2.7)
A 		39
avr 12.3
(-2.4) 		21.1
(-0.8) 		42.8
(3) 		42.1
(2.9) 		37.7
(2.1) 		8.9
(-3) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188413_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2653
Sequence Type Exemplar sequence
Representative Public ID F15A4.8 NCBI
Target Description F15A4.8 /REP_DB=WormBase Gene ID /WP=CE15845 /TR=O17813 /GB=CAB02942.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=chitinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064259(11), NM_182152(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064259 NCBI Caenorhabditis elegans F15A4.8a (chitinase) mRNA, complete cds. 11/11 None
NM_182152 NCBI Caenorhabditis elegans F15A4.8b (chitinase) mRNA, complete cds. 11/11 None
SNAP00000042550 ENSEMBL cdna:SNAP chromosome:CEL140:II:12473847:12476203:-1 11/11 None
GENEFINDER00000042563 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12475417:12478820:-1 11/11 None
F15A4.8a ENSEMBL cdna:known chromosome:CEL140:II:12475241:12478820:-1 gene:F15A4.8 11/11 None
F15A4.8b ENSEMBL cdna:known chromosome:CEL140:II:12475417:12478820:-1 gene:F15A4.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12475413-12478817(-) 100.0 100.0
Public Domain and Genome References
Ensembl F15A4.8
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02942 Hypothetical protein F15A4.8a [Caenorhabditis elegans] ref|NP_496660.1| F15A4.8a [Caenorhabditis elegans] 0.0
blast CAD59145 Hypothetical protein F15A4.8b [Caenorhabditis elegans] ref|NP_871952.1| F15A4.8b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 5.0E-52
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 5.3E-112
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 1.8E-56
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 2.3E-101
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 1.8E-56
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 1.1E-60
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496660.1 1 26-48
NP_871952.1 1 26-48
F15A4.8a 1 26-48
F15A4.8b 1 26-48
GENEFINDER00000042563 1 26-48
Sequence
Target Sequence 
>C. ELEGANS:188413_S_AT
agcacatggtttcagagtttctttctgaattacgacaggctctgcaaacccagtatctaa
tctcaattcaagtgcctgcatttatgcaaaactacaatttggatgatattccggagcatg
ttgactatattaatgtctactcaatggaaaagtttagttcactaattggtcctcttccac
tgtactccggccatgaaccacagataaacttcaacgtcgctagaattatggatggttata
ctagtaacaatgaaaagcacgctaagaagtttaatctaggaattttattttctgccaagc
tatggaaaaatgttgaagaacccgccgaaaatggaagggacttgttcatccacgctgata
aaggagctaccatgtcacgatcaattgcaaagaaaaaaggatggagactgacatctgctg
attgggatgagacgactaagacttcgtatatttggaatcccgaaacaaaggaattgctaa
catttgaaactgatcggagtataaatgaaaaaaccaagtacataaagcgggtgaatattg
gtggagtctgtctttgggcagtggatatggacgacggtactcttctggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCACATGGTTTCAGAGTTTCTTTC 102 77 1655 Antisense
GAATTACGACAGGCTCTGCAAACCC 338 325 1681 Antisense
CTGCAAACCCAGTATCTAATCTCAA 151 237 1696 Antisense
CTAATCTCAATTCAAGTGCCTGCAT 304 227 1711 Antisense
TTAGTTCACTAATTGGTCCTCTTCC 315 681 1808 Antisense
TACTCCGGCCATGAACCACAGATAA 649 645 1837 Antisense
GGACTTGTTCATCCACGCTGATAAA 467 525 1992 Antisense
GGAGCTACCATGTCACGATCAATTG 500 521 2017 Antisense
GGAGACTGACATCTGCTGATTGGGA 503 519 2057 Antisense
GTGGAGTCTGTCTTTGGGCAGTGGA 243 491 2195 Antisense
TATGGACGACGGTACTCTTCTGGAA 480 653 2220 Antisense
Sequence Source Affymetrix Proprietary Database