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[188412_at] esterase

Description C42D4.2 /REP_DB=WormBase Gene ID /WP=CE04190 /TR=Q18573 /GB=AAA83348.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=esterase
Cluster 6grp_total > 97      4grp_total > 09      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 254
1 2 3 4 range
A 6.9
(-3)
A 		32.3
(-2.4)
A 		32.3
(-2.4)
A 		260.4
(3)
P 		254
B 15
(-3)
A 		14.3
(-3)
A 		34.1
(-2.4)
A 		208.1
(3)
P 		194
C 33.3
(-3)
A 		42.4
(-2.7)
A 		44.1
(-2.6)
P 		198.9
(3)
P 		166
avr 18.4
(-3) 		29.7
(-2.7) 		36.8
(-2.5) 		222.5
(3) 		204

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 119
1 2 3 4 5 6 range
A 13.7
(-3)
A 		18.9
(-2.7)
A 		76.2
(1.1)
P 		36
(-1.5)
A 		92.4
(2.2)
P 		104.5
(3)
P 		91
B 62.8
(-1)
P 		28.5
(-3)
A 		38.6
(-2.4)
A 		54.9
(-1.5)
P 		72.9
(-0.4)
P 		132.2
(3)
P 		104
C 29.8
(-2.7)
A 		34
(-2.2)
A 		27.1
(-3)
A 		62.7
(1.1)
A 		69.7
(2)
A 		78.7
(3)
P 		52
avr 35.4
(-2.4) 		27.1
(-3) 		47.3
(-1.4) 		51.2
(-1.1) 		78.3
(0.9) 		105.1
(3) 		78
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 2.5
(-3)
A 		7
(-2.2)
A 		8.4
(-2)
A 		38.1
(3)
P 		36
B 4.8
(-2.8)
A 		3.5
(-3)
A 		7.9
(-2.4)
A 		44.3
(3)
P 		41
C 11
(-3)
A 		12.2
(-2.7)
A 		15.4
(-1.8)
P 		33.5
(3)
P 		23
avr 6.1
(-3) 		7.6
(-2.7) 		10.6
(-2.2) 		38.6
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 2.5
(-3)
A 		6.7
(-2)
A 		16.6
(0.3)
P 		9.1
(-1.4)
A 		27.9
(3)
P 		25.4
(2.4)
P 		25
B 21.8
(-1.1)
P 		9.5
(-3)
A 		9.4
(-3)
A 		14.5
(-2.2)
P 		29.6
(0)
P 		49.3
(3)
P 		40
C 11.1
(-1.7)
A 		10.4
(-1.9)
A 		6.9
(-3)
A 		12.6
(-1.2)
A 		22.6
(1.9)
A 		26.3
(3)
P 		19
avr 11.8
(-2.3) 		8.9
(-3) 		11
(-2.5) 		12.1
(-2.2) 		26.7
(1.3) 		33.7
(3) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188412_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8406
Sequence Type Exemplar sequence
Representative Public ID C42D4.2 NCBI
Target Description C42D4.2 /REP_DB=WormBase Gene ID /WP=CE04190 /TR=Q18573 /GB=AAA83348.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=esterase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068732(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068732 NCBI Caenorhabditis elegans C42D4.2 (esterase) mRNA, complete cds. 10/11 None
SNAP00000029585 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7180829:7182768:1 9/11 None
GENEFINDER00000029598 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7180549:7182768:1 10/11 None
C42D4.2 ENSEMBL cdna:known chromosome:CEL140:IV:7180586:7182944:1 gene:C42D4.2 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7180648-7182774(+) 100.0 100.0
Public Domain and Genome References
Gene Title esterase
Ensembl C42D4.2
Entrez Gene 177493 Entrez gene
SwissProt Q18573 EMBL-EBI
WormBase CE34747 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_501133 C42D4.2 [Caenorhabditis elegans] gb|AAA83348.2| Hypothetical protein C42D4.2 [Caenorhabditis elegans] 0.0
blast AAC02583 Hypothetical protein C17H12.4 [Caenorhabditis elegans] ref|NP_501043.1| C17H12.4 [Caenorhabditis elegans] 0.0
blast CAE61828 Hypothetical protein CBG05798 [Caenorhabditis briggsae] 0.0
blast AAC02583 Hypothetical protein C17H12.4 [Caenorhabditis elegans] ref|NP_501043.1| C17H12.4 [Caenorhabditis elegans] 1.0E-155
blast CAE61828 Hypothetical protein CBG05798 [Caenorhabditis briggsae] 1.0E-152
Protein Domains
Database ID Description E-Value
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 1.7E-68
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 2.0E-55
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 5.8E-10
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 2.4E-105
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501133.2 1 453-475
C42D4.2 1 453-475
SNAP00000029585 1 443-465
GENEFINDER00000029598 1 532-554
Sequence
Target Sequence 
>C. ELEGANS:188412_AT
aaagaacattccggcgtatcactacgagtatgcttacccgaaacatgccaatcatacaga
tgatctctttttcataatgggcgttcatccttttattcaagacgaaaatgagattaagct
aggaaatttttatagaagcatgtttttaaactttatcaaaaccgggaacccgggaaatgg
atgtgatggtgcaaatttgaatggatcaacatattttgaagttaattggaatgaaactac
cggagaaagaccagtgatgaaaaataattttgagcaaaaggtaaaaacaaactgtttaca
tgccaactctaaaagtaaacgtatatttcagatactggattactggaccaaaaatatgat
agaattcgatcgagaagtatcattattaagaaacattaaatctcggagacaaccagcatc
aagagttttttcagcatattacagctttatgtcatttcctcaaactctatttattttgtt
cattattttctcatcgttcgctacaggatatatagcttcaagaacttgtagtattgctga
tcacga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGAACATTCCGGCGTATCACTAC 653 123 1062 Antisense
GTATCACTACGAGTATGCTTACCCG 697 453 1077 Antisense
ATGCTTACCCGAAACATGCCAATCA 399 43 1091 Antisense
GATCTCTTTTTCATAATGGGCGTTC 76 419 1123 Antisense
GGGCGTTCATCCTTTTATTCAAGAC 133 493 1140 Antisense
CAAACTGTTTACATGCCAACTCTAA 12 191 1349 Antisense
AATCTCGGAGACAACCAGCATCAAG 54 171 1460 Antisense
GCTTTATGTCATTTCCTCAAACTCT 296 305 1505 Antisense
TGTTCATTATTTTCTCATCGTTCGC 73 563 1538 Antisense
TTTTCTCATCGTTCGCTACAGGATA 363 677 1547 Antisense
GAACTTGTAGTATTGCTGATCACGA 350 351 1583 Antisense
Sequence Source Affymetrix Proprietary Database