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[188409_s_at] cyclin

Description ZC168.4 /REP_DB=WormBase Gene ID /WP=CE06570 /TR=SW:Q10653 /GB=CAA94384.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=cyclin
Cluster 6grp_high1_10_10 > 88      6grp_total > 98      4grp_total > 50      6grp_cgc > 69      6grp_high1_sub > Da      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 234
1 2 3 4 range
A 178
(-2.9)
A 		289.1
(3)
P 		274.9
(2.2)
P 		176.9
(-3)
A 		112
B 155.8
(-3)
P 		332.5
(3)
P 		273.2
(1)
P 		164
(-2.7)
M 		177
C 121.9
(-3)
P 		355.7
(3)
P 		284.9
(1.2)
P 		159.4
(-2)
A 		234
avr 151.9
(-3) 		325.8
(3) 		277.7
(1.3) 		166.8
(-2.5) 		174

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1120
1 2 3 4 5 6 range
A 125.8
(-3)
P 		160
(-2.8)
P 		151.4
(-2.8)
P 		295.7
(-1.8)
P 		854.6
(2.2)
P 		958.9
(3)
P 		833
B 199.3
(-2.8)
P 		167.1
(-2.9)
A 		157.4
(-3)
A 		259.9
(-2.4)
M 		851.1
(0.8)
P 		1245.7
(3)
P 		1088
C 251.6
(-2.6)
P 		196.3
(-2.9)
P 		178.3
(-3)
A 		293.9
(-2.3)
P 		881.4
(1.2)
P 		1183.1
(3)
P 		1005
avr 192.2
(-2.8) 		174.5
(-2.9) 		162.4
(-3) 		283.2
(-2.3) 		862.4
(1.3) 		1129.2
(3) 		967
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 64.8
(2.1)
A 		62.8
(1.8)
P 		71.9
(3)
P 		25.9
(-3)
A 		46
B 49.7
(-1.1)
P 		82.1
(3)
P 		63.3
(0.6)
P 		35
(-3)
M 		47
C 40.3
(-1.9)
P 		102.3
(3)
P 		99.3
(2.8)
P 		26.9
(-3)
A 		75
avr 51.6
(-0.5) 		82.4
(3) 		78.2
(2.5) 		29.3
(-3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 441
1 2 3 4 5 6 range
A 23.2
(-3)
P 		56.9
(-2.1)
P 		33
(-2.7)
P 		75
(-1.7)
P 		257.9
(3)
P 		233.5
(2.4)
P 		235
B 69.4
(-2.6)
P 		55.6
(-2.8)
A 		38.2
(-3)
A 		68.8
(-2.6)
M 		345.8
(1.3)
P 		464.5
(3)
P 		426
C 93.3
(-2.2)
P 		59.9
(-2.8)
P 		45.4
(-3)
A 		59.1
(-2.8)
P 		285.2
(1.1)
P 		396
(3)
P 		351
avr 62
(-2.6) 		57.5
(-2.7) 		38.9
(-3) 		67.6
(-2.5) 		296.3
(1.7) 		364.7
(3) 		326
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188409_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9864
Sequence Type Exemplar sequence
Representative Public ID ZC168.4 NCBI
Target Description ZC168.4 /REP_DB=WormBase Gene ID /WP=CE06570 /TR=SW:Q10653 /GB=CAA94384.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=cyclin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069586(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069586 NCBI Caenorhabditis elegans ZC168.4 (cyclin) mRNA, complete cds. 11/11 A 
SNAP00000040685 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10735428:10736724:1 11/11 None
GENEFINDER00000040690 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10735428:10736724:1 11/11 None
ZC168.4.3 ENSEMBL cdna:known chromosome:CEL140:IV:10735314:10737147:1 gene:ZC168.4 11/11 A 
ZC168.4.1 ENSEMBL cdna:known chromosome:CEL140:IV:10735327:10737147:1 gene:ZC168.4 11/11 A 
ZC168.4.4 ENSEMBL cdna:known chromosome:CEL140:IV:10735412:10737147:1 gene:ZC168.4 11/11 A 
ZC168.4.2 ENSEMBL cdna:known chromosome:CEL140:IV:10735414:10737147:1 gene:ZC168.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10735433-10736730(+) 100.0 100.0
Public Domain and Genome References
Gene Title cyclin
Gene Symbol cyb-1
Ensembl ZC168.4
Entrez Gene 177965 Entrez gene
SwissProt Q10653 EMBL-EBI
WormBase CE06570 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:16851_S_AT cyclin 3a (CYC3a) at
ATH1-121501:246938_AT cyclin 3a (CYC3a) at
CANINE_2:CFAAFFX.12419.1.S1_S_AT similar to G2/mitotic-specific cyclin B1 cfa
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
74 regulation of progression through cell cycle inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA94384 Hypothetical protein ZC168.4 [Caenorhabditis elegans] ref|NP_501987.1| ZC168.4 [Caenorhabditis elegans] sp|Q10653|CCNB1_CAEEL G2/mitotic-specific cyclin B1 gb|AAA84394.1| cyclin B 0.0
blast CAE70859 Hypothetical protein CBG17647 [Caenorhabditis briggsae] 1.0E-125
Protein Domains
Database ID Description E-Value
Pfam IPR004367 EMBL-EBI Cyclin, C-terminal 1.8E-21
Pfam IPR006671 EMBL-EBI Cyclin, N-terminal domain 5.2E-57
Sequence
Target Sequence 
>C. ELEGANS:188409_S_AT
gaagaggtttacctcccagacatccacgactacgagttcatcactgagaacacatacagc
aagaagcagatcttggcaatggagcaaacaatccttaactcgttgaactttgacttgtcc
tgcccatcttcgcttgtcttcctccgctgtctctcaagaattctctccgaaaacgatgcc
agcccaatcgataatcaagctttctgttatacttacaatatctccaagtgtctcggagag
ctcgcactgctcgattcggttatggcctcgaccccaaggtcccacattgcttctgcttcg
atgatcatcgctcttgaagttcatcct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGAGGTTTACCTCCCAGACATCC 238 333 511 Antisense
GACATCCACGACTACGAGTTCATCA 437 369 529 Antisense
GGAGCAAACAATCCTTAACTCGTTG 598 519 591 Antisense
CTGTCTCTCAAGAATTCTCTCCGAA 17 241 657 Antisense
AATTCTCTCCGAAAACGATGCCAGC 368 177 669 Antisense
GATGCCAGCCCAATCGATAATCAAG 125 415 685 Antisense
AATCAAGCTTTCTGTTATACTTACA 649 169 703 Antisense
CAAGTGTCTCGGAGAGCTCGCACTG 75 185 735 Antisense
GCACTGCTCGATTCGGTTATGGCCT 692 311 754 Antisense
ACATTGCTTCTGCTTCGATGATCAT 379 105 794 Antisense
GATCATCGCTCTTGAAGTTCATCCT 292 421 813 Antisense
Sequence Source Affymetrix Proprietary Database