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[188405_at]

Description F40F4.4 /REP_DB=WormBase Gene ID /WP=CE04534 /GEN=lbp-3 /TR=SW:Q20222 /GB=AAA81433.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 05      6grp_high1_10_10 > 10      4grp_highest_8_8 > 24      4grp_high_8_8 > 52      6grp_highest_nonorm > 32      6grp_total > 50      4grp_total > 60      6grp_highest_sub > 03_04      6grp_cgc > 60      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1050
1 2 3 4 range
A 1073
(0.5)
P 		1492.5
(3)
P 		1155.9
(1)
P 		474.8
(-3)
P 		1018
B 1346.6
(2.3)
P 		1460.2
(3)
P 		1351.1
(2.4)
P 		442.1
(-3)
P 		1018
C 1149
(1.3)
P 		1286.7
(2.4)
P 		1358.3
(3)
P 		600.1
(-3)
P 		758
avr 1189.5
(1.5) 		1413.1
(3) 		1288.4
(2.2) 		505.7
(-3) 		907

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1542
1 2 3 4 5 6 range
A 1541.4
(2.7)
P 		955.4
(-0.5)
P 		1595.2
(3)
P 		1126.1
(0.4)
P 		805.3
(-1.3)
P 		504.2
(-3)
P 		1091
B 1601.8
(1.2)
P 		1202.9
(-0.5)
P 		2046.6
(3)
P 		1527.3
(0.9)
P 		1049
(-1.1)
P 		594.9
(-3)
P 		1452
C 1355.1
(0.3)
P 		1217
(-0.3)
P 		1082.6
(-0.9)
P 		1923.9
(3)
P 		735.6
(-2.6)
P 		640.5
(-3)
P 		1283
avr 1499.4
(2.5) 		1125.1
(0.3) 		1574.8
(3) 		1525.8
(2.7) 		863.3
(-1.3) 		579.9
(-3) 		995
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 404
1 2 3 4 range
A 390.7
(3)
P 		324
(1.8)
P 		302.2
(1.3)
P 		69.5
(-3)
P 		321
B 429.4
(3)
P 		360.6
(1.8)
P 		313.1
(0.9)
P 		94.2
(-3)
P 		335
C 380.4
(1.5)
P 		369.9
(1.3)
P 		473.4
(3)
P 		101.2
(-3)
P 		372
avr 400.2
(3) 		351.5
(2.1) 		362.9
(2.3) 		88.3
(-3) 		312

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 435
1 2 3 4 5 6 range
A 284.1
(1.3)
P 		339.8
(2.8)
P 		347.4
(3)
P 		285.6
(1.3)
P 		243
(0.2)
P 		122.7
(-3)
P 		225
B 557.4
(3)
P 		400.4
(0.2)
P 		497
(1.9)
P 		404.5
(0.3)
P 		426.2
(0.7)
P 		221.8
(-3)
P 		336
C 502.3
(3)
P 		371.4
(0.3)
P 		275.5
(-1.7)
P 		386.9
(0.6)
P 		238
(-2.5)
P 		214.4
(-3)
P 		288
avr 447.9
(3) 		370.5
(1.2) 		373.3
(1.3) 		359
(1) 		302.4
(-0.3) 		186.3
(-3) 		262
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188405_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18356
Sequence Type Exemplar sequence
Representative Public ID F40F4.4 NCBI
Target Description F40F4.4 /REP_DB=WormBase Gene ID /WP=CE04534 /GEN=lbp-3 /TR=SW:Q20222 /GB=AAA81433.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076155(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076155 NCBI Caenorhabditis elegans Lipid Binding Protein family member (lbp-3) (lbp-3) mRNA, complete cds. 11/11 None
F40F4.4 ENSEMBL cdna:known chromosome:CEL140:X:3256999:3258080:1 gene:F40F4.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000025265 8/11 Cross Hyb Matching Probes None
GENEFINDER00000025277 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3256976-3258053(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol lbp-3
Ensembl F40F4.4
Entrez Gene 180615 Entrez gene
SwissProt Q20222 EMBL-EBI
WormBase CE30130 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5488 binding inferred from electronic annotation QuickGO AmiGO
8289 lipid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA81433 Lipid binding protein protein 3 [Caenorhabditis elegans] ref|NP_508556.2| Lipid Binding Protein family member (lbp-3) [Caenorhabditis elegans] sp|Q20222|FABP3_CAEEL Fatty acid-binding protein homolog 3 precursor (Lipid binding protein 3) 6.0E-93
blast CAE68398 Hypothetical protein CBG14167 [Caenorhabditis briggsae] 1.0E-73
blast AAB04984 Lipid binding protein protein 4 [Caenorhabditis elegans] ref|NP_505016.1| Lipid Binding Protein family member (lbp-4) [Caenorhabditis elegans] sp|Q23092|FABP4_CAEEL Fatty acid-binding protein homolog 4.0E-56
Protein Domains
Database ID Description E-Value
Pfam IPR000566 EMBL-EBI Lipocalin-related protein and Bos/Can/Equ allergen 0.0025
Sequence
Target Sequence 
>C. ELEGANS:188405_AT
gtgcattttgtgtgctccagagtacactcaaagcatagggctatgaggcagatgctcaca
atttcggatctcaatgataccgagccattgggcctatgtaataaatcaacaattatggct
gaggcggcttctgaaattccagagaagttttttggaaagtatgatctcgacagaagtgag
aactttgacgagttcctggctgctaaaggagtgagctggtttgtgagacaaatgatcaaa
ttggcaaaagtgagcaaggtgctggccaaaaatgaaactcctggaaaatacaacatggaa
aacttgacttcaaagaagaatacactctaccacgggtgggagctcgggaaaactttcgag
gcagaaggccttgatggagttgcacacaagattaccttctccttcaaagacggagttttg
tctgagcaccatatccgactcaacgacccagaacacagcgcggagacgtactactacact
atcgagaacgatcaacttgtcatgaaaatggtcaacaatggaatcacgtgccgtcgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGCATTTTGTGTGCTCCAGAGTAC 463 479 187 Antisense
GATGCTCACAATTTCGGATCTCAAT 10 415 237 Antisense
GATACCGAGCCATTGGGCCTATGTA 671 421 262 Antisense
TGGCTGAGGCGGCTTCTGAAATTCC 621 543 302 Antisense
ACTTTGACGAGTTCCTGGCTGCTAA 261 103 368 Antisense
GAATACACTCTACCACGGGTGGGAG 227 321 504 Antisense
GAAGGCCTTGATGGAGTTGCACACA 412 333 550 Antisense
GTTGCACACAAGATTACCTTCTCCT 174 439 565 Antisense
GAGTTTTGTCTGAGCACCATATCCG 509 397 599 Antisense
ACAGCGCGGAGACGTACTACTACAC 521 107 641 Antisense
CAACAATGGAATCACGTGCCGTCGT 387 189 699 Antisense
Sequence Source Affymetrix Proprietary Database