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[188403_at] chitinase

Description C08H9.6 /REP_DB=WormBase Gene ID /WP=CE02992 /TR=Q17841 /GB=CAA91154.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=chitinase
Cluster 6grp_total > 77      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 430
1 2 3 4 range
A 10
(-2.8)
A 		37.6
(-2.3)
A 		1.8
(-3)
A 		310.3
(3)
P 		309
B 11.3
(-3)
A 		8.3
(-3)
A 		19.4
(-2.8)
A 		372.7
(3)
P 		364
C 35.2
(-2.5)
A 		2
(-3)
A 		1.3
(-3)
A 		431.5
(3)
P 		430
avr 18.8
(-2.8) 		16
(-2.9) 		7.5
(-3) 		371.5
(3) 		364

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 168
1 2 3 4 5 6 range
A 3.1
(-3)
A 		2.5
(-3)
A 		6.4
(-2.8)
A 		47.9
(-1.1)
A 		11.2
(-2.6)
A 		147.4
(3)
P 		145
B 4.1
(-2.9)
A 		15.5
(-2.5)
A 		2.7
(-3)
A 		5.1
(-2.9)
A 		24.6
(-2.2)
A 		170.1
(3)
P 		167
C 8.7
(-2.7)
A 		2.9
(-3)
A 		5.3
(-2.9)
A 		3.9
(-2.9)
A 		27.7
(-1.6)
A 		107.5
(3)
P 		105
avr 5.3
(-3) 		7
(-2.9) 		4.8
(-3) 		19
(-2.4) 		21.2
(-2.3) 		141.7
(3) 		137
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 3.6
(-2.6)
A 		8.2
(-2)
A 		0.5
(-3)
A 		45.4
(3)
P 		45
B 3.6
(-2.9)
A 		2
(-3)
A 		4.5
(-2.8)
A 		79.4
(3)
P 		77
C 11.7
(-2.1)
A 		0.6
(-3)
A 		0.4
(-3)
A 		72.8
(3)
P 		72
avr 6.3
(-2.6) 		3.6
(-2.8) 		1.8
(-3) 		65.9
(3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 0.6
(-3)
A 		0.9
(-2.9)
A 		1.4
(-2.9)
A 		12.2
(-1)
A 		3.4
(-2.5)
A 		35.9
(3)
P 		35
B 1.4
(-2.9)
A 		5.2
(-2.6)
A 		0.6
(-3)
A 		1.3
(-2.9)
A 		10
(-2.1)
A 		63.4
(3)
P 		63
C 3.2
(-2.6)
A 		0.9
(-3)
A 		1.4
(-2.9)
A 		0.8
(-3)
A 		9
(-1.6)
A 		36
(3)
P 		35
avr 1.7
(-2.9) 		2.3
(-2.8) 		1.1
(-3) 		4.8
(-2.5) 		7.5
(-2.1) 		45.1
(3) 		44
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188403_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3280
Sequence Type Exemplar sequence
Representative Public ID C08H9.6 NCBI
Target Description C08H9.6 /REP_DB=WormBase Gene ID /WP=CE02992 /TR=Q17841 /GB=CAA91154.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=chitinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063732(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063732 NCBI Caenorhabditis elegans C08H9.6 (chitinase) mRNA, complete cds. 11/11 None
SNAP00000001375 ENSEMBL cdna:SNAP chromosome:CEL140:II:9871571:9874432:-1 10/11 None
GENEFINDER00000001384 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9873175:9874432:-1 11/11 None
C08H9.6 ENSEMBL cdna:known chromosome:CEL140:II:9873175:9874513:-1 gene:C08H9.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9873171-9874510(-) 100.0 100.0
Public Domain and Genome References
Gene Title chitinase
Ensembl C08H9.6
Entrez Gene 182431 Entrez gene
SwissProt Q17841 EMBL-EBI
WormBase CE02992 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA91154 Hypothetical protein C08H9.6 [Caenorhabditis elegans] ref|NP_496133.1| C08H9.6 [Caenorhabditis elegans] 0.0
blast CAA91153 Hypothetical protein C08H9.14 [Caenorhabditis elegans] ref|NP_496132.1| C08H9.14 [Caenorhabditis elegans] 0.0
blast CAE67788 Hypothetical protein CBG13364 [Caenorhabditis briggsae] 4.0E-84
blast CAE67788 Hypothetical protein CBG13364 [Caenorhabditis briggsae] 9.0E-84
blast CAE67796 Hypothetical protein CBG13374 [Caenorhabditis briggsae] 8.0E-61
Protein Domains
Database ID Description E-Value
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 1.0E-79
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 4.5E-94
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 1.0E-79
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496133.1 1 12-34
C08H9.6 1 12-34
Sequence
Target Sequence 
>C. ELEGANS:188403_AT
gaatcacattgatttcctcaacgtcttatcaatcaactattatgagccattacccggtaa
tggagctaatatcggtccaatatctccattatatggtggacaaagaggaaatgtagatgg
aacattgaaatatttaacttgcattacaaaaagaccgagtattctcaatatgggagtcac
tttcacgggaatattttggaatggtgtgaaagacgggctcaacgagcaagacgatatttg
gaaagtagctcagaatgagaatggcccgggtaaaagtattggatggaggaaattcattaa
ggaccgaagaaatacaattccacaatggcatgactcgtctaaaagctcatatgcctggga
cccgaaatctaaaatatttctagcttttgaaaatgagaaaagcttatcggagaaggtgat
ttatgttcgaaacaagaatattggaggacttgttatatggaatgtggatcaagatgacaa
tgacaactctcttttgaatgcattaacatccatggatatgtgcgcacgaggttctggggg
t

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCACATTGATTTCCTCAACGTC 665 327 603 Antisense
TCCTCAACGTCTTATCAATCAACTA 32 587 617 Antisense
AACTATTATGAGCCATTACCCGGTA 287 109 637 Antisense
ATATCGGTCCAATATCTCCATTATA 360 21 671 Antisense
TATGGGAGTCACTTTCACGGGAATA 2 655 771 Antisense
GGTGTGAAAGACGGGCTCAACGAGC 37 501 805 Antisense
ATTCCACAATGGCATGACTCGTCTA 174 7 919 Antisense
GACTCGTCTAAAAGCTCATATGCCT 138 375 934 Antisense
GCTCATATGCCTGGGACCCGAAATC 178 301 947 Antisense
ATGACAACTCTCTTTTGAATGCATT 307 43 1082 Antisense
TATGTGCGCACGAGGTTCTGGGGGT 626 651 1119 Antisense
Sequence Source Affymetrix Proprietary Database