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[188398_at] Carbohydrate kinase

Description R08D7.7 /REP_DB=WormBase Gene ID /WP=CE01048 /GB=CAA78053.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Carbohydrate kinase
Cluster 6grp_highest_10_10 > 25      6grp_high1_10_10 > 40      4grp_highest_8_8 > 08      4grp_high_8_8 > 53      6grp_highest_nonorm > 71      6grp_total > 53      4grp_total > 59      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 216
1 2 3 4 range
A 275.8
(-0.7)
P 		378.5
(3)
P 		304.7
(0.3)
P 		212.5
(-3)
P 		166
B 240.4
(-1)
P 		316
(3)
P 		273.3
(0.7)
P 		202.8
(-3)
P 		113
C 330.4
(0.5)
P 		336.5
(0.7)
P 		419.2
(3)
P 		205.2
(-3)
P 		214
avr 282.2
(0.3) 		343.7
(3) 		332.4
(2.5) 		206.8
(-3) 		137

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 515
1 2 3 4 5 6 range
A 243.2
(-1.7)
P 		302.8
(-1)
P 		643.7
(3)
P 		217.8
(-2)
P 		128.8
(-3)
P 		146.2
(-2.8)
P 		515
B 213.5
(-2)
P 		283.2
(-0.9)
P 		522.3
(3)
P 		275.9
(-1)
P 		184.1
(-2.4)
P 		149.8
(-3)
P 		373
C 264.2
(-0.8)
P 		262.7
(-0.8)
P 		411.1
(3)
P 		312.7
(0.5)
P 		176.2
(-3)
P 		201.8
(-2.3)
P 		235
avr 240.3
(-1.7) 		282.9
(-1) 		525.7
(3) 		268.8
(-1.2) 		163
(-3) 		165.9
(-3) 		363
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 115
1 2 3 4 range
A 100.4
(3)
P 		82.2
(1.4)
P 		79.7
(1.2)
P 		31.1
(-3)
P 		69
B 76.6
(2.8)
P 		78
(3)
P 		63.3
(0.5)
P 		43.2
(-3)
P 		35
C 109.4
(1)
P 		96.7
(0.3)
P 		146.1
(3)
P 		34.6
(-3)
P 		112
avr 95.5
(2.9) 		85.6
(1.9) 		96.4
(3) 		36.3
(-3) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 105
1 2 3 4 5 6 range
A 44.8
(-2.5)
P 		107.7
(1.1)
P 		140.2
(3)
P 		55.2
(-1.9)
P 		38.9
(-2.8)
P 		35.6
(-3)
P 		105
B 74.3
(-1.4)
P 		94.3
(0.2)
P 		126.8
(3)
P 		73.1
(-1.5)
P 		74.8
(-1.4)
P 		55.9
(-3)
P 		71
C 97.9
(2.2)
P 		80.2
(-0.1)
P 		104.6
(3)
P 		62.9
(-2.3)
P 		57
(-3)
P 		67.5
(-1.7)
P 		48
avr 72.3
(-1.4) 		94.1
(0.5) 		123.9
(3) 		63.7
(-2.1) 		56.9
(-2.7) 		53
(-3) 		71
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188398_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7953
Sequence Type Exemplar sequence
Representative Public ID R08D7.7 NCBI
Target Description R08D7.7 /REP_DB=WormBase Gene ID /WP=CE01048 /GB=CAA78053.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Carbohydrate kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066587(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066587 NCBI Caenorhabditis elegans R08D7.7 (R08D7.7) mRNA, complete cds. 11/11 None
SNAP00000012571 ENSEMBL cdna:SNAP chromosome:CEL140:III:8992971:8994580:1 11/11 None
GENEFINDER00000012583 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8993201:8994580:1 11/11 None
R08D7.7 ENSEMBL cdna:known chromosome:CEL140:III:8992131:8994580:1 gene:R08D7.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8992126-8994576(+) 100.0 100.0
Public Domain and Genome References
Gene Title Carbohydrate kinase
Ensembl R08D7.7
Entrez Gene 187700 Entrez gene
SwissProt P30646 EMBL-EBI
WormBase CE01048 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:248591_AT xylulose kinase, putative at
CANINE_2:CFAAFFX.8465.1.S1_AT similar to xylulokinase homolog cfa
DROSOPHILA_2:1635487_AT dm
DROSGENOME1:154175_AT dm
CHICKEN:GGA.10481.1.S1_AT xylulokinase homolog (H. influenzae) gga
HG-U95AV2:31767_AT xylulokinase homolog (H. influenzae) hs
HG-U133_PLUS_2:208318_S_AT xylulokinase homolog (H. influenzae) hs
HG-U133A:208318_S_AT xylulokinase homolog (H. influenzae) hs
HG-FOCUS:208318_S_AT xylulokinase homolog (H. influenzae) hs
HG-U133A_2:208318_S_AT xylulokinase homolog (H. influenzae) hs
HG-U133_PLUS_2:208317_AT xylulokinase homolog (H. influenzae) hs
HG-U133A:208317_AT xylulokinase homolog (H. influenzae) hs
HG-U133A_2:208317_AT xylulokinase homolog (H. influenzae) hs
U133_X3P:G4827059_3P_AT xylulokinase homolog (H. influenzae) hs
U133_X3P:HS2.403387.1.S1_3P_AT xylulokinase homolog (H. influenzae) hs
HG-U133_PLUS_2:1569683_AT xylulokinase homolog (H. influenzae) hs
HG-U133A_2:214776_X_AT xylulokinase homolog (H. influenzae) hs
HG-U133_PLUS_2:214776_X_AT xylulokinase homolog (H. influenzae) hs
HG-U133A:214776_X_AT xylulokinase homolog (H. influenzae) hs
HG-U95D:70436_AT Xylulokinase homolog (H. influenzae) hs
HG-U95D:73208_AT Xylulokinase homolog (H. influenzae) hs
U133_X3P:HS.137580.1.S1_3P_AT Xylulokinase homolog (H. influenzae) hs
MG-U74BV2:111058_AT xylulokinase homolog (H. influenzae) mm
MOE430A:1426706_S_AT xylulokinase homolog (H. influenzae) mm
MOUSE430A_2:1426706_S_AT xylulokinase homolog (H. influenzae) mm
MOUSE430_2:1426706_S_AT xylulokinase homolog (H. influenzae) mm
MU19KSUBA:TC18865_AT Xylulokinase homolog (H. influenzae), mRNA (cDNA clone IMAGE:5043428) mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
5975 carbohydrate metabolism inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA78053 Hypothetical protein R08D7.7 [Caenorhabditis elegans] emb|CAA77591.1| Hypothetical protein R08D7.7 [Caenorhabditis elegans] ref|NP_498988.1| R08D7.7 [Caenorhabditis elegans] sp|P30646|YNE7_CAEEL Hypothetical protein R08D7.7 in chromosome III 0.0
blast S31122 hypothetical protein F59B2.1 - Caenorhabditis elegans 0.0
blast CAE62699 Hypothetical protein CBG06848 [Caenorhabditis briggsae] 0.0
blast CAA78053 Hypothetical protein R08D7.7 [Caenorhabditis elegans] emb|CAA77591.1| Hypothetical protein R08D7.7 [Caenorhabditis elegans] ref|NP_498988.1| R08D7.7 [Caenorhabditis elegans] sp|P30646|YNE7_CAEEL Hypothetical protein R08D7.7 in chromosome III 1.0E-139
blast S31122 hypothetical protein F59B2.1 - Caenorhabditis elegans 1.0E-139
Protein Domains
Database ID Description E-Value
Pfam IPR000577 EMBL-EBI Carbohydrate kinase, FGGY 2.1E-11
Pfam IPR000577 EMBL-EBI Carbohydrate kinase, FGGY 2.1E-11
Pfam IPR000577 EMBL-EBI Carbohydrate kinase, FGGY 2.1E-11
Sequence
Target Sequence 
>C. ELEGANS:188398_AT
aacggctcactaacccgagaaagagctcgtaacctgaacaatagttcgtgggacaaatgg
gataaaataatgaagaaaactccagctggaaatgataattatattggttttttcttcgat
gaagatgagattgtacccagaaaaccaaaaggagattatacttttgagtgttctgaggaa
gaattgaaaaataaacatccagagaaatttgcgcgagcagtatttgaaagtcaatgtctt
tttaaacttctttacactcaaaaaatgggatttaagaaatccgattgtagtcgaattttg
gtaactggaggagcatctcgtaatacagttttattacaaattttgtctgatgtctttgaa
atgccagtctgcacaattgatgttgatggttcagcagctcttggtggagctatgagatct
agatatggtaagttgaaagtaatatttaatatattccaatctaaaatttcagtacactct
aaaactacgaaaacatattcccaatattatccatgtgacaatgtatcacttgcctgccaa
cctatttctgccaacgtggaagtctacagtaacctattcaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACGGCTCACTAACCCGAGAAAGAG 164 143 1006 Antisense
GAAAGAGCTCGTAACCTGAACAATA 305 359 1024 Antisense
TTATATTGGTTTTTTCTTCGATGAA 684 679 1104 Antisense
ACATCCAGAGAAATTTGCGCGAGCA 291 107 1200 Antisense
GAGGAGCATCTCGTAATACAGTTTT 133 405 1313 Antisense
GATGTCTTTGAAATGCCAGTCTGCA 482 409 1354 Antisense
TGCCAGTCTGCACAATTGATGTTGA 629 585 1367 Antisense
TGATGGTTCAGCAGCTCTTGGTGGA 594 565 1389 Antisense
TGACAATGTATCACTTGCCTGCCAA 80 573 1521 Antisense
CCAACCTATTTCTGCCAACGTGGAA 286 275 1542 Antisense
GGAAGTCTACAGTAACCTATTCAAG 581 531 1563 Antisense
Sequence Source Affymetrix Proprietary Database