[Home] | [Total List]

[188393_at]

Description T06C10.4 /REP_DB=WormBase Gene ID /WP=CE04902 /GEN=flp-10 /TR=Q22242 /GB=AAA82299.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 49      6grp_high1_10_10 > 94      4grp_highest_8_8 > 30      4grp_high_8_8 > 05      6grp_highest_nonorm > 73      6grp_total > 84      4grp_total > 04      6grp_highest_sub > 04_05_06      6grp_cgc > 77      6grp_high1_sub > In      6grp_cgc_sub > 04_05_06      6grp_total_sub > Hat      6grp_rule_based > S5      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1015
1 2 3 4 range
A 430.2
(-2.2)
P 		296.2
(-3)
P 		314.6
(-2.9)
P 		1272.4
(3)
P 		976
B 458.6
(-1.7)
P 		292.5
(-2.8)
P 		257.8
(-3)
P 		1216.5
(3)
P 		959
C 486.6
(-1.7)
P 		300.8
(-3)
P 		336
(-2.7)
P 		1138.5
(3)
P 		838
avr 458.5
(-1.9) 		296.5
(-3) 		302.8
(-3) 		1209.1
(3) 		913

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 285
1 2 3 4 5 6 range
A 372.9
(-3)
P 		408.7
(-2.2)
P 		563.8
(1.3)
P 		514
(0.2)
P 		638.7
(3)
P 		512.8
(0.2)
P 		266
B 386.3
(-3)
P 		409.2
(-2.5)
P 		613.5
(2.1)
P 		557.1
(0.8)
P 		653.9
(3)
P 		610.2
(2)
P 		268
C 369
(-3)
P 		368.8
(-3)
P 		401.3
(-2.3)
P 		589.7
(2)
P 		634.2
(3)
P 		583.3
(1.8)
P 		265
avr 376.1
(-3) 		395.6
(-2.6) 		526.2
(0.4) 		553.6
(1) 		642.3
(3) 		568.8
(1.3) 		266
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 200
1 2 3 4 range
A 156.6
(1.5)
P 		64.3
(-3)
P 		82.2
(-2.1)
P 		186.3
(3)
P 		122
B 146.3
(-0.4)
P 		72.3
(-2.6)
P 		59.7
(-3)
P 		259.2
(3)
P 		200
C 161.1
(1.2)
P 		86.5
(-3)
P 		117.1
(-1.3)
P 		192
(3)
P 		106
avr 154.7
(0.5) 		74.4
(-3) 		86.3
(-2.5) 		212.5
(3) 		138

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 197
1 2 3 4 5 6 range
A 68.7
(-3)
P 		145.3
(0.7)
P 		122.8
(-0.4)
P 		130.4
(-0)
P 		192.7
(3)
P 		124.9
(-0.3)
P 		124
B 134.4
(-3)
P 		136.2
(-2.9)
P 		149
(-2.3)
P 		147.6
(-2.4)
P 		265.7
(3)
P 		227.5
(1.3)
P 		131
C 136.8
(-1)
P 		112.5
(-2.4)
P 		102.1
(-3)
P 		118.6
(-2)
P 		205.2
(3)
P 		195.3
(2.4)
P 		103
avr 113.3
(-3) 		131.3
(-2) 		124.6
(-2.4) 		132.2
(-1.9) 		221.2
(3) 		182.6
(0.9) 		108
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188393_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9421
Sequence Type Exemplar sequence
Representative Public ID T06C10.4 NCBI
Target Description T06C10.4 /REP_DB=WormBase Gene ID /WP=CE04902 /GEN=flp-10 /TR=Q22242 /GB=AAA82299.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068905(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068905 NCBI Caenorhabditis elegans FMRF-Like Peptide family member (flp-10) (flp-10) mRNA, complete cds. 11/11 None
SNAP00000043495 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7868913:7869610:1 11/11 None
GENEFINDER00000043501 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7868913:7869610:1 11/11 None
T06C10.4.2 ENSEMBL cdna:known chromosome:CEL140:IV:7868888:7870055:1 gene:T06C10.4 11/11 None
T06C10.4.1 ENSEMBL cdna:known chromosome:CEL140:IV:7868890:7870058:1 gene:T06C10.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7868918-7869616(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol flp-10
Ensembl T06C10.4
Entrez Gene 177574 Entrez gene
SwissProt Q22242 EMBL-EBI
WormBase CE04902 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_501306 FMRF-Like Peptide family member (flp-10) [Caenorhabditis elegans] gb|AAC08947.1| FMRFamide-like peptide 10 [Caenorhabditis elegans] gb|AAA82299.1| Fmrf-like peptide protein 10 [Caenorhabditis elegans] 7.0E-20
blast CAE70900 Hypothetical protein CBG17695 [Caenorhabditis briggsae] 2.0E-15
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501306.1 1 5-22
T06C10.4.2 1 5-22
T06C10.4.1 1 5-22
SNAP00000043495 1 5-22
GENEFINDER00000043501 1 5-22
Sequence
Target Sequence 
>C. ELEGANS:188393_AT
cgctgtttttgctgttcctatcagcgatgcttcccgtgctcgtcgtcaagtcgcatcgga
gaagcgtcaaccaaaggcacgctctggatacattcgattcggaaaacgaagagtcgatcc
aaatgcaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGCTGTTTTTGCTGTTCCTATCAGC 208 255 57 Antisense
TGCTGTTCCTATCAGCGATGCTTCC 233 583 66 Antisense
CTCGTCGTCAAGTCGCATCGGAGAA 223 233 95 Antisense
CGTCGTCAAGTCGCATCGGAGAAGC 474 245 97 Antisense
GCATCGGAGAAGCGTCAACCAAAGG 29 309 109 Antisense
CGTCAACCAAAGGCACGCTCTGGAT 166 247 121 Antisense
CAAAGGCACGCTCTGGATACATTCG 155 193 128 Antisense
AGGCACGCTCTGGATACATTCGATT 577 53 131 Antisense
CACGCTCTGGATACATTCGATTCGG 166 199 134 Antisense
CGCTCTGGATACATTCGATTCGGAA 454 255 136 Antisense
AACGAAGAGTCGATCCAAATGCAGA 306 145 161 Antisense
Sequence Source Affymetrix Proprietary Database