[Home] | [Total List]

[188388_at] ATPase

Description Y47G6A.10 /REP_DB=WormBase Gene ID /WP=CE24356 /TR=Q9N3T5 /GB=AAF60660.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=ATPase
Cluster 6grp_total > 57      4grp_total > 60      6grp_cgc > 37      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 271
1 2 3 4 range
A 378.3
(3)
A 		267.7
(0.3)
A 		318.6
(1.5)
A 		136.1
(-3)
A 		242
B 329.6
(1.6)
A 		320.3
(1.3)
A 		379.9
(3)
A 		167.9
(-3)
A 		212
C 354.4
(1.8)
A 		352.7
(1.8)
A 		407.1
(3)
P 		139.2
(-3)
A 		268
avr 354.1
(2.6) 		313.6
(1.5) 		368.5
(3) 		147.7
(-3) 		221

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 368
1 2 3 4 5 6 range
A 214
(3)
A 		108
(-2)
A 		125.6
(-1.2)
A 		108.7
(-2)
A 		87.2
(-3)
A 		177.7
(1.3)
A 		127
B 193.6
(-1.2)
A 		116.7
(-2.5)
A 		141.9
(-2.1)
A 		110.9
(-2.6)
A 		89
(-3)
A 		442.1
(3)
P 		353
C 133.8
(-2)
A 		154.1
(-1.7)
A 		128.7
(-2.1)
A 		180.2
(-1.2)
A 		74.5
(-3)
A 		428.5
(3)
P 		354
avr 180.5
(-0.8) 		126.3
(-2) 		132.1
(-1.9) 		133.3
(-1.9) 		83.6
(-3) 		349.4
(3) 		266
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 122
1 2 3 4 range
A 137.7
(3)
A 		58.1
(-1.1)
A 		83.3
(0.2)
A 		19.9
(-3)
A 		118
B 105.1
(3)
A 		79.1
(0.7)
A 		88
(1.5)
A 		35.8
(-3)
A 		69
C 117.3
(1.8)
A 		101.4
(0.9)
A 		141.9
(3)
P 		23.5
(-3)
A 		118
avr 120
(3) 		79.5
(0.4) 		104.4
(2) 		26.4
(-3) 		94

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 141
1 2 3 4 5 6 range
A 39.5
(1.7)
A 		38.4
(1.3)
A 		27.3
(-2.6)
A 		27.6
(-2.5)
A 		26.3
(-3)
A 		43.3
(3)
A 		17
B 67.3
(-1.3)
A 		38.9
(-2.6)
A 		34.5
(-2.8)
A 		29.4
(-3)
A 		36.2
(-2.7)
A 		164.9
(3)
P 		136
C 49.6
(-1.7)
A 		47
(-1.8)
A 		32.8
(-2.6)
A 		36.2
(-2.4)
A 		24.1
(-3)
A 		143.4
(3)
P 		119
avr 52.1
(-1.4) 		41.4
(-2.2) 		31.5
(-2.8) 		31.1
(-2.9) 		28.9
(-3) 		117.2
(3) 		88
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188388_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.94
Sequence Type Exemplar sequence
Representative Public ID Y47G6A.10 NCBI
Target Description Y47G6A.10 /REP_DB=WormBase Gene ID /WP=CE24356 /TR=Q9N3T5 /GB=AAF60660.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=ATPase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058764(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058764 NCBI Caenorhabditis elegans Y47G6A.10 (ATPase) mRNA, complete cds. 10/11 None
SNAP00000033974 ENSEMBL cdna:SNAP chromosome:CEL140:I:3462820:3477950:1 10/11 None
GENEFINDER00000034066 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3476519:3477950:1 9/11 None
Y47G6A.10 ENSEMBL cdna:known chromosome:CEL140:I:3467131:3477972:1 gene:Y47G6A.10 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3467134-3477950(+) 90.11 100.0
Public Domain and Genome References
Gene Title ATPase
Gene Symbol spg-7
Ensembl Y47G6A.10
Entrez Gene 171915 Entrez gene
SwissProt Q9N3T5 EMBL-EBI
WormBase CE34400 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:261064_AT FtsH protease, putative at
CANINE:1601636_S_AT similar to AFG3-like protein 2 (Paraplegin-like protein) cfa
CANINE:1595504_S_AT similar to AFG3-like protein 2 (Paraplegin-like protein) cfa
CANINE:1587058_AT similar to AFG3-like protein 2 (Paraplegin-like protein) cfa
CANINE_2:CFA.19965.1.S1_S_AT similar to AFG3-like protein 2 (Paraplegin-like protein) cfa
CANINE_2:CFA.7454.1.A1_AT similar to AFG3-like protein 2 (Paraplegin-like protein) cfa
CANINE_2:CFAAFFX.28741.1.S1_AT similar to AFG3-like protein 2 (Paraplegin-like protein) cfa
DROSGENOME1:141468_AT dm
DROSOPHILA_2:1634899_A_AT dm
CHICKEN:GGA.4152.1.S1_S_AT similar to AFG3-like protein 2 (Paraplegin-like protein) gga
CHICKEN:GGAAFFX.24294.1.S1_AT similar to AFG3-like protein 2 (Paraplegin-like protein) gga
CHICKEN:GGAAFFX.24294.2.S1_S_AT similar to AFG3-like protein 2 (Paraplegin-like protein) gga
HU35KSUBB:RC_W56804_AT AFG3 ATPase family gene 3-like 2 (yeast) hs
HG-U133A:202486_AT AFG3 ATPase family gene 3-like 2 (yeast) hs
HG-U133_PLUS_2:202486_AT AFG3 ATPase family gene 3-like 2 (yeast) hs
HG-FOCUS:202486_AT AFG3 ATPase family gene 3-like 2 (yeast) hs
HG-U133A_2:202486_AT AFG3 ATPase family gene 3-like 2 (yeast) hs
U133_X3P:G5802969_3P_AT AFG3 ATPase family gene 3-like 2 (yeast) hs
U133_X3P:HS2.416822.1.A1_3P_AT AFG3 ATPase family gene 3-like 2 (yeast) hs
HG-U133_PLUS_2:1557820_AT AFG3 ATPase family gene 3-like 2 (yeast) hs
HG-U95AV2:34315_AT AFG3 ATPase family gene 3-like 2 (yeast) hs
HG-U133_PLUS_2:238151_AT AFG3 ATPase family gene 3-like 2 (yeast) hs
HG-U133B:238151_AT AFG3 ATPase family gene 3-like 2 (yeast) hs
HG-U95C:62707_AT AFG3 ATPase family gene 3-like 2 (yeast) hs
HU35KSUBD:RC_AA598437_AT AFG3 ATPase family gene 3-like 2 (yeast) hs
MOUSE430_2:1454003_AT AFG3(ATPase family gene 3)-like 2 (yeast) mm
MOE430B:1454003_AT AFG3(ATPase family gene 3)-like 2 (yeast) mm
MG-U74BV2:112793_AT AFG3(ATPase family gene 3)-like 2 (yeast) mm
MOE430A:1427207_S_AT AFG3(ATPase family gene 3)-like 2 (yeast) mm
MOUSE430A_2:1427207_S_AT AFG3(ATPase family gene 3)-like 2 (yeast) mm
MOUSE430_2:1427207_S_AT AFG3(ATPase family gene 3)-like 2 (yeast) mm
MOE430A:1427206_AT AFG3(ATPase family gene 3)-like 2 (yeast) mm
MOUSE430A_2:1427206_AT AFG3(ATPase family gene 3)-like 2 (yeast) mm
MOUSE430_2:1427206_AT AFG3(ATPase family gene 3)-like 2 (yeast) mm
MG-U74BV2:165296_F_AT AFG3(ATPase family gene 3)-like 2 (yeast), mRNA (cDNA clone MGC:47048 IMAGE:5042649) mm
MU19KSUBA:TC20322_AT AFG3(ATPase family gene 3)-like 2 (yeast), mRNA (cDNA clone MGC:47048 IMAGE:5042649) mm
MU19KSUBA:TC20322_G_AT AFG3(ATPase family gene 3)-like 2 (yeast), mRNA (cDNA clone MGC:47048 IMAGE:5042649) mm
MU19KSUBC:TC37730_S_AT AFG3(ATPase family gene 3)-like 2 (yeast), mRNA (cDNA clone MGC:47048 IMAGE:5042649) mm
MU19KSUBC:TC38532_AT AFG3(ATPase family gene 3)-like 2 (yeast), mRNA (cDNA clone MGC:47048 IMAGE:5042649) mm
RG-U34B:RC_AA925137_AT AFG3(ATPase family gene 3)-like 2 (yeast) (predicted) rn
RAE230A:1375022_AT AFG3(ATPase family gene 3)-like 2 (yeast) (predicted) rn
RAT230_2:1375022_AT AFG3(ATPase family gene 3)-like 2 (yeast) (predicted) rn
YEAST_2:1773134_AT Component, with Afg3p, of the mitochondrial inner membrane m-AAA protease that mediates degradation of misfolded or unassembled proteins and is also required for correct assembly of mitochondrial enzyme complexes Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
30163 protein catabolism inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
166 nucleotide binding inferred from electronic annotation QuickGO AmiGO
4222 metalloendopeptidase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_491165 Y47G6A.10 [Caenorhabditis elegans] gb|AAF60660.2| Human spg (spastic paraplegia) protein 7 [Caenorhabditis elegans] 0.0
blast CAE68967 Hypothetical protein CBG14947 [Caenorhabditis briggsae] 0.0
blast EAA04719 ENSANGP00000021654 [Anopheles gambiae str. PEST] ref|XP_308807.2| ENSANGP00000021654 [Anopheles gambiae str. PEST] 0.0
blast NP_491165 Y47G6A.10 [Caenorhabditis elegans] gb|AAF60660.2| Human spg (spastic paraplegia) protein 7 [Caenorhabditis elegans] 5.0E-59
Protein Domains
Database ID Description E-Value
Pfam IPR000642 EMBL-EBI Peptidase M41 8.7E-111
Pfam IPR003959 EMBL-EBI AAA ATPase, central region 5.1E-92
Pfam IPR005936 EMBL-EBI Peptidase M41, FtsH 2.2E-39
Pfam IPR000642 EMBL-EBI Peptidase M41 8.7E-111
Pfam IPR003959 EMBL-EBI AAA ATPase, central region 5.1E-92
Pfam IPR005936 EMBL-EBI Peptidase M41, FtsH 2.2E-39
Pfam IPR000642 EMBL-EBI Peptidase M41 5.2E-27
Sequence
Target Sequence 
>C. ELEGANS:188388_AT
tcacaggtcgtcaagtttggaatgagcgaaaaggtcggaccgttgtcgtttgagacacca
gctccgggagaaatggcatttgataaaccgtactcggaggccaccgcacagctcattgat
caggagcaatttgccgatttgccggaaattttagattccggtaatttgccgatttgccgg
aaattttcaattccggcaatttgccgatttgccggaaattttcaattccgtcaatttgcc
aatttgccaaattgccggaaattctcaattccgacaatttgccaatttgccggaaatttt
aacttccagaaaattgctgatttgccggaaaaaatcgtccgagatctcgtaatgaacgca
cttcgccgaacccgtgatctattattggaaaagagaagtgatattgaacgagtcgcattg
agacttcttgaaaaagagattcttaatcgtgaagatatgattgaacttgttggaaaaaga
ccatttgttgagaagaatacgtacgaggaaatggtctcaggtaccggaggactcgatgaa
aatgttgaacttccgaaaggtctcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCACAGGTCGTCAAGTTTGGAATGA 436 627 1942 Antisense
GGTCGGACCGTTGTCGTTTGAGACA 176 485 1974 Antisense
TTTGAGACACCAGCTCCGGGAGAAA 562 665 1990 Antisense
TGATAAACCGTACTCGGAGGCCACC 211 565 2022 Antisense
CACCGCACAGCTCATTGATCAGGAG 343 201 2043 Antisense
GGAAAAAATCGTCCGAGATCTCGTA 198 527 2268 Antisense
TCTCGTAATGAACGCACTTCGCCGA 708 611 2286 Antisense
CGCCGAACCCGTGATCTATTATTGG 270 257 2305 Antisense
GAACGAGTCGCATTGAGACTTCTTG 700 347 2347 Antisense
TGGTCTCAGGTACCGGAGGACTCGA 627 541 2453 Antisense
AATGTTGAACTTCCGAAAGGTCTCG 630 161 2482 Antisense
Sequence Source Affymetrix Proprietary Database