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[188385_at] peptidase

Description R119.2 /REP_DB=WormBase Gene ID /WP=CE18156 /TR=O61710 /GB=AAC16431.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=peptidase
Cluster 6grp_total > 85      4grp_total > 26      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 13.5
(-2.8)
A 		51.5
(3)
A 		40.9
(1.4)
A 		12
(-3)
A 		40
B 11.7
(-1.8)
A 		35.4
(2.5)
A 		4.7
(-3)
A 		38.3
(3)
M 		34
C 16.1
(-3)
A 		27.6
(-2)
A 		23.4
(-2.4)
A 		85.6
(3)
A 		70
avr 13.8
(-3) 		38.2
(1.6) 		23
(-1.2) 		45.3
(3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 8.4
(-1.8)
A 		6
(-2.8)
A 		18.7
(2.5)
A 		5.6
(-3)
A 		19.9
(3)
A 		6.8
(-2.5)
A 		14
B 23.8
(0.8)
A 		3.7
(-2.8)
A 		10.8
(-1.5)
A 		36.3
(3)
A 		2.5
(-3)
A 		34.1
(2.6)
A 		34
C 1.5
(-3)
A 		2.1
(-2.7)
A 		1.8
(-2.9)
A 		4.9
(-1.4)
A 		14.5
(3)
A 		3.3
(-2.2)
A 		13
avr 11.2
(0.7) 		3.9
(-3) 		10.4
(0.3) 		15.6
(3) 		12.3
(1.3) 		14.7
(2.5) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 4.9
(-1)
A 		11.2
(3)
A 		10.7
(2.7)
A 		1.8
(-3)
A 		9
B 3.7
(-1)
A 		8.8
(3)
A 		1.1
(-3)
A 		8.2
(2.5)
M 		8
C 5.3
(-3)
A 		7.9
(-1.3)
A 		8.1
(-1.2)
A 		14.4
(3)
A 		9
avr 4.6
(-3) 		9.3
(3) 		6.6
(-0.4) 		8.1
(1.5) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 1.6
(-2.7)
A 		2.1
(-2.1)
A 		4.1
(0.5)
A 		1.4
(-3)
A 		6
(3)
A 		1.6
(-2.7)
A 		5
B 8.3
(0.7)
A 		1.2
(-2.9)
A 		2.6
(-2.2)
A 		9.6
(1.4)
A 		1
(-3)
A 		12.7
(3)
A 		12
C 0.6
(-2.9)
A 		0.6
(-2.9)
A 		0.5
(-3)
A 		1
(-2.3)
A 		4.7
(3)
A 		1.1
(-2.1)
A 		4
avr 3.5
(0.5) 		1.3
(-3) 		2.4
(-1.3) 		4
(1.3) 		3.9
(1.1) 		5.1
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188385_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2591
Sequence Type Exemplar sequence
Representative Public ID R119.2 NCBI
Target Description R119.2 /REP_DB=WormBase Gene ID /WP=CE18156 /TR=O61710 /GB=AAC16431.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=peptidase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058324(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058324 NCBI Caenorhabditis elegans R119.2 (peptidase) mRNA, complete cds. 11/11 None
SNAP00000007612 ENSEMBL cdna:SNAP chromosome:CEL140:I:368778:379072:-1 11/11 None
GENEFINDER00000007617 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:368778:379099:-1 11/11 None
R119.2 ENSEMBL cdna:known chromosome:CEL140:I:368373:371636:-1 gene:R119.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:368777-371636(-) 100.0 100.0
Public Domain and Genome References
Gene Title peptidase
Ensembl R119.2
Entrez Gene 187899 Entrez gene
SwissProt O61710 EMBL-EBI
WormBase CE34356 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8235 metalloexopeptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC16431 Hypothetical protein R119.2 [Caenorhabditis elegans] ref|NP_490725.2| R119.2 [Caenorhabditis elegans] 0.0
blast CAE74384 Hypothetical protein CBG22114 [Caenorhabditis briggsae] 1.0E-166
blast CAE74384 Hypothetical protein CBG22114 [Caenorhabditis briggsae] 1.0E-165
blast AAC16429 Hypothetical protein R119.3 [Caenorhabditis elegans] ref|NP_490726.1| R119.3 [Caenorhabditis elegans] 1.0E-119
blast AAC16429 Hypothetical protein R119.3 [Caenorhabditis elegans] ref|NP_490726.1| R119.3 [Caenorhabditis elegans] 1.0E-117
blast CAE74546 Hypothetical protein CBG22303 [Caenorhabditis briggsae] 2.0E-97
blast AAC16431 Hypothetical protein R119.2 [Caenorhabditis elegans] ref|NP_490725.2| R119.2 [Caenorhabditis elegans] 1.0E-85
Protein Domains
Database ID Description E-Value
Pfam IPR000994 EMBL-EBI Peptidase M24 2.0E-14
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 3.8E-33
Pfam IPR000994 EMBL-EBI Peptidase M24 2.0E-14
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 3.4E-31
Pfam IPR000994 EMBL-EBI Peptidase M24 2.0E-14
Sequence
Target Sequence 
>C. ELEGANS:188385_AT
atccccgggaatgtgttctcgtggatgctgggtgtgatttgaatggttatgtgtcagatg
tgacacgttgctttccgatttctggattctggtcagacgcccaactatccctctacgaag
cgcttctctacgttcacgaagaactgctcacctacgcccactcaatggaaaaagtccgcc
taagcgccctgttccgccgaatgaacgaacttctcgcggcaagtttcaccgaactcggcc
tgattcgatctacggatcacaaggagatgattcatcaggcggagaagctgtgtccccacc
acgtcagtcattatctcggaatggatgttcacgattgtccgacagtatcccgagacattg
atctaccaccgaatgtgccatttaccattgagccgggagtgtatgttccgatggattggc
ctgtcaaagagtttcgtggcattggataccgtatcgaggatgacgtggcgactagtgaag
ctggagggattgagctgttgactgctgcagtgccaagggatcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCCCCGGGAATGTGTTCTCGTGGA 345 37 605 Antisense
ATGTGACACGTTGCTTTCCGATTTC 353 49 662 Antisense
TCTACGAAGCGCTTCTCTACGTTCA 665 611 716 Antisense
CTTCTCGCGGCAAGTTTCACCGAAC 230 221 814 Antisense
ACTCGGCCTGATTCGATCTACGGAT 51 101 837 Antisense
ATCAGGCGGAGAAGCTGTGTCCCCA 609 29 878 Antisense
CCACCACGTCAGTCATTATCTCGGA 621 273 900 Antisense
GGATGTTCACGATTGTCCGACAGTA 583 513 927 Antisense
TCCCGAGACATTGATCTACCACCGA 552 597 952 Antisense
TGTGCCATTTACCATTGAGCCGGGA 557 555 978 Antisense
TGACTGCTGCAGTGCCAAGGGATCC 553 567 1103 Antisense
Sequence Source Affymetrix Proprietary Database