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[188381_s_at] cuticlin

Description Y53H1B.1 /REP_DB=WormBase Gene ID /WP=CE22434 /TR=Q9U250 /GB=CAB60411.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=cuticlin
Cluster 6grp_total > 15      4grp_total > 52      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 535
1 2 3 4 range
A 451.9
(3)
P 		416
(2.4)
P 		411.5
(2.4)
P 		64.4
(-3)
A 		388
B 353.1
(1.2)
P 		478.6
(3)
P 		353.3
(1.2)
P 		63.4
(-3)
A 		415
C 345.5
(-0)
P 		598.8
(3)
P 		422.5
(0.9)
P 		92.7
(-3)
A 		506
avr 383.5
(1.4) 		497.8
(3) 		395.8
(1.6) 		73.5
(-3) 		424

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 393
1 2 3 4 5 6 range
A 310.8
(3)
P 		312.9
(3)
P 		180.8
(0.1)
P 		174.9
(-0)
P 		38.3
(-3)
A 		57.8
(-2.6)
A 		275
B 431.6
(3)
P 		284.9
(0.6)
P 		175.8
(-1.2)
P 		85.5
(-2.7)
P 		129.5
(-2)
P 		67.1
(-3)
A 		365
C 410.3
(3)
P 		299.2
(1.1)
P 		202.8
(-0.6)
P 		97.2
(-2.4)
P 		95.3
(-2.4)
P 		62.7
(-3)
A 		348
avr 384.2
(3) 		299
(1.4) 		186.5
(-0.7) 		119.2
(-1.9) 		87.7
(-2.5) 		62.5
(-3) 		322
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 163
1 2 3 4 range
A 164.5
(3)
P 		90.3
(0.1)
P 		107.6
(0.8)
P 		9.4
(-3)
A 		155
B 112.6
(2.7)
P 		118.2
(3)
P 		81.9
(0.9)
P 		13.5
(-3)
A 		105
C 114.4
(0.8)
P 		172.2
(3)
P 		147.3
(2)
P 		15.6
(-3)
A 		157
avr 130.5
(3) 		126.9
(2.8) 		112.3
(2.1) 		12.8
(-3) 		118

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 141
1 2 3 4 5 6 range
A 57.3
(-0.2)
P 		111.3
(3)
P 		39.4
(-1.3)
P 		44.4
(-1)
P 		11.6
(-3)
A 		14.1
(-2.8)
A 		100
B 150.2
(3)
P 		94.8
(0.4)
P 		42.7
(-2.1)
P 		22.6
(-3)
P 		52.6
(-1.6)
P 		25
(-2.9)
A 		128
C 152.1
(3)
P 		91.3
(0.2)
P 		51.6
(-1.6)
P 		19.6
(-3)
P 		30.8
(-2.5)
P 		21
(-2.9)
A 		133
avr 119.9
(3) 		99.1
(1.8) 		44.6
(-1.5) 		28.9
(-2.5) 		31.7
(-2.3) 		20
(-3) 		100
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188381_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2506
Sequence Type Exemplar sequence
Representative Public ID Y53H1B.1 NCBI
Target Description Y53H1B.1 /REP_DB=WormBase Gene ID /WP=CE22434 /TR=Q9U250 /GB=CAB60411.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=cuticlin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060499(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060499 NCBI Caenorhabditis elegans Y53H1B.1 (cuticlin) mRNA, complete cds. 11/11 None
SNAP00000041757 ENSEMBL cdna:SNAP chromosome:CEL140:I:11302763:11305291:-1 11/11 None
GENEFINDER00000041761 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11302763:11305291:-1 11/11 None
Y53H1B.1 ENSEMBL cdna:known chromosome:CEL140:I:11302760:11305291:-1 gene:Y53H1B.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11302693-11305222(-) 100.0 100.0
Public Domain and Genome References
Gene Title cuticlin
Ensembl Y53H1B.1
Entrez Gene 173021 Entrez gene
SwissProt Q9U250 EMBL-EBI
WormBase CE22434 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60411 Hypothetical protein Y53H1B.1 [Caenorhabditis elegans] ref|NP_492900.1| Y53H1B.1 [Caenorhabditis elegans] 0.0
blast CAE73050 Hypothetical protein CBG20420 [Caenorhabditis briggsae] 1.0E-180
blast CAE70602 Hypothetical protein CBG17277 [Caenorhabditis briggsae] 3.0E-61
Protein Domains
Database ID Description E-Value
Pfam IPR001507 EMBL-EBI Endoglin/CD105 antigen 2.6E-63
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492900.1 1 367-389
Y53H1B.1 1 367-389
SNAP00000041757 1 367-389
GENEFINDER00000041761 1 367-389
Sequence
Target Sequence 
>C. ELEGANS:188381_S_AT
tcgtgcattcttgcttcgtggacgatggaaatggtgatgagcgtaagccgctgctcgacg
agcacggttgtgctattgatccactgatcctcccggatctgacctacaacaaggacaaca
acgtggcgtatgctcaagtgaacaccttcaagtttgccgacaaggtctccacgtacttcc
agtgtgctgtgagcacctgcatgaataccgagggaatgtgcgatgggaaaacgccaccac
gttgcggaccagcaggctcgttccgttcttcatccagctcaaatgacaatggcttcaacc
gacgttctcgccgagcaactttgtccaacaggactgctgtcaactgggtacacttggcag
atacaatggatctggccgcaaataagattactgtatttgagctggaagagaagcagaata
gtgaggataaggatgaacccccagctcactcccacctggcaatcctccaaggatcccatc
cctccacagtggtctgtctcaaccaatctaggatccaaatattctttgtcttatcatttt
taatgctcaccgtggttacggttcttaccattttcactgtacga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGTGCATTCTTGCTTCGTGGACGA 116 605 599 Antisense
TGATGAGCGTAAGCCGCTGCTCGAC 195 567 633 Antisense
GCACGGTTGTGCTATTGATCCACTG 707 315 660 Antisense
GTGAACACCTTCAAGTTTGCCGACA 137 483 736 Antisense
TCCACGTACTTCCAGTGTGCTGTGA 533 589 766 Antisense
GTGCGATGGGAAAACGCCACCACGT 270 479 816 Antisense
TGACAATGGCTTCAACCGACGTTCT 400 563 882 Antisense
GCCGAGCAACTTTGTCCAACAGGAC 59 285 908 Antisense
AGGACTGCTGTCAACTGGGTACACT 307 55 928 Antisense
GTCTGTCTCAACCAATCTAGGATCC 462 471 1090 Antisense
GGTTCTTACCATTTTCACTGTACGA 154 507 1158 Antisense
Sequence Source Affymetrix Proprietary Database