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[188380_at] chitinase

Description K08F9.3 /REP_DB=WormBase Gene ID /WP=CE11946 /TR=O17940 /GB=CAB03188.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=chitinase
Cluster 6grp_total > 28      4grp_total > 11      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 107
1 2 3 4 range
A 70.4
(-2.4)
A 		78.9
(-1.7)
A 		61.9
(-3)
A 		143.2
(3)
A 		81
B 66.4
(-0.1)
A 		45.4
(-2.3)
A 		39
(-3)
A 		95.9
(3)
A 		57
C 64
(-1.8)
A 		68.4
(-1.5)
A 		42.8
(-3)
A 		146
(3)
A 		103
avr 66.9
(-1.6) 		64.2
(-1.8) 		47.9
(-3) 		128.4
(3) 		81

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 306
1 2 3 4 5 6 range
A 320.6
(3)
A 		104.6
(-2.3)
A 		79.9
(-2.9)
A 		76.9
(-3)
A 		85.7
(-2.8)
A 		96.4
(-2.5)
A 		244
B 200.7
(3)
P 		88.1
(-1.8)
A 		82.5
(-2.1)
A 		60.3
(-3)
A 		85.1
(-1.9)
A 		114.7
(-0.7)
A 		140
C 218
(3)
P 		100.1
(-0.5)
A 		14.6
(-3)
A 		62.7
(-1.6)
A 		70.8
(-1.3)
A 		116.3
(0)
A 		203
avr 246.4
(3) 		97.6
(-1.8) 		59
(-3) 		66.6
(-2.8) 		80.5
(-2.3) 		109.1
(-1.4) 		187
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 25.6
(3)
A 		17.1
(-2.4)
A 		16.2
(-3)
A 		21
(0.1)
A 		9
B 21.2
(3)
A 		11.2
(-1.9)
A 		9
(-3)
A 		20.4
(2.6)
A 		12
C 21.2
(0.9)
A 		19.7
(-0)
A 		14.9
(-3)
A 		24.6
(3)
A 		10
avr 22.7
(3) 		16
(-1.3) 		13.4
(-3) 		22
(2.5) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 59.1
(3)
A 		37.2
(-0.2)
A 		17.4
(-3)
A 		19.5
(-2.7)
A 		25.9
(-1.8)
A 		23.5
(-2.1)
A 		42
B 69.8
(3)
P 		29.3
(-1.5)
A 		20
(-2.6)
A 		16
(-3)
A 		34.6
(-0.9)
A 		42.8
(-0)
A 		54
C 80.8
(3)
P 		30.5
(-0.9)
A 		3.7
(-3)
A 		12.6
(-2.3)
A 		22.9
(-1.5)
A 		38.9
(-0.3)
A 		77
avr 69.9
(3) 		32.3
(-1) 		13.7
(-3) 		16
(-2.8) 		27.8
(-1.5) 		35.1
(-0.7) 		56
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188380_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13276
Sequence Type Exemplar sequence
Representative Public ID K08F9.3 NCBI
Target Description K08F9.3 /REP_DB=WormBase Gene ID /WP=CE11946 /TR=O17940 /GB=CAB03188.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=chitinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074334(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074334 NCBI Caenorhabditis elegans K08F9.3 (chitinase) mRNA, complete cds. 10/11 None
K08F9.3 ENSEMBL cdna:known chromosome:CEL140:V:15145294:15146496:1 gene:K08F9.3 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15144640-15146496(+) 100.0 100.0
Public Domain and Genome References
Gene Title chitinase
Ensembl K08F9.3
Entrez Gene 187168 Entrez gene
SwissProt O17940 EMBL-EBI
WormBase CE28942 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03188 Hypothetical protein K08F9.3 [Caenorhabditis elegans] ref|NP_506735.1| K08F9.3 [Caenorhabditis elegans] 1.0E-159
blast CAE59369 Hypothetical protein CBG02718 [Caenorhabditis briggsae] 2.0E-13
blast CAA87665 Hypothetical protein T19H5.1 [Caenorhabditis elegans] ref|NP_496033.1| T19H5.1 [Caenorhabditis elegans] 9.0E-13
Protein Domains
Database ID Description E-Value
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 2.7E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506735.1 1 73-95
K08F9.3 1 73-95
Sequence
Target Sequence 
>C. ELEGANS:188380_AT
cagtcaaacattgctcccgatcaatgtgataagcaactaatcggctactacaatggaata
gagggacgaaatattttggaaaatcaatttcataatctaactcacgcagtttttacatca
gaatttgtcaatgaaaacggctcttttgaaaactcacacaaagaacaagaatttttggaa
tgcagaaaaaaattaggtgaatcgaattcaacggcgaagattatgatagctatgggcttt
aataaaggatcctgcaaaattgactgcatcacttctttcattgaaaaataccaagtagac
ggcgtggaactacattggaaccataatgaacactttttaagtcaactagaaactactaga
aatcttaagaatcgactaaaaaagatatccaattccaagctcctgggtgtttcagcatcc
tccaactggtctagggtgaccgagcttgatcaagttctagaggtggcagattttgagttt
gatgattacaatgatattttactgaactctgttaagccttgcaacaataccaaggccaag
tacaacttttcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGTCAAACATTGCTCCCGATCAAT 499 207 400 Antisense
GATAAGCAACTAATCGGCTACTACA 405 423 427 Antisense
ATTTCATAATCTAACTCACGCAGTT 10 17 486 Antisense
ACTCACGCAGTTTTTACATCAGAAT 120 101 499 Antisense
AATTGACTGCATCACTTCTTTCATT 305 179 657 Antisense
GACGGCGTGGAACTACATTGGAACC 468 369 697 Antisense
TCCAAGCTCCTGGGTGTTTCAGCAT 573 587 793 Antisense
CATCCTCCAACTGGTCTAGGGTGAC 203 211 815 Antisense
AGGGTGACCGAGCTTGATCAAGTTC 514 57 832 Antisense
ACTGAACTCTGTTAAGCCTTGCAAC 193 97 900 Antisense
ACCAAGGCCAAGTACAACTTTTCAT 234 85 928 Antisense
Sequence Source Affymetrix Proprietary Database