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[188379_at] fibrillin

Description T26E3.6 /REP_DB=WormBase Gene ID /WP=CE14194 /TR=O45828 /GB=CAB04833.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=fibrillin
Cluster 6grp_total > 50      4grp_total > 19      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 5.5
(-2)
A 		4.5
(-3)
A 		4.8
(-2.7)
A 		10.4
(3)
A 		6
B 8.3
(-1.4)
A 		4.8
(-3)
A 		10.5
(-0.4)
A 		18.1
(3)
A 		13
C 7
(-1.3)
A 		17.7
(3)
A 		2.6
(-3)
A 		6.5
(-1.5)
A 		15
avr 6.9
(-2.1) 		9
(0.2) 		6
(-3) 		11.7
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 8.9
(2.5)
A 		3
(-1.5)
A 		0.8
(-3)
A 		9.6
(3)
A 		1.5
(-2.5)
A 		2
(-2.2)
A 		9
B 6.7
(-0.8)
A 		1.8
(-3)
A 		13
(2)
A 		15.2
(3)
A 		2.8
(-2.6)
A 		4.7
(-1.7)
A 		13
C 1.6
(-2.7)
A 		6.4
(-0.7)
A 		15.2
(3)
A 		1.1
(-2.9)
A 		2.5
(-2.3)
A 		0.8
(-3)
A 		14
avr 5.7
(-0.2) 		3.7
(-1.9) 		9.7
(3) 		8.6
(2.1) 		2.3
(-3) 		2.5
(-2.8) 		7
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 2
(3)
A 		1
(-3)
A 		1.3
(-1.2)
A 		1.5
(0)
A 		1
B 2.6
(0.2)
A 		1.2
(-3)
A 		2.4
(-0.2)
A 		3.8
(3)
A 		3
C 2.3
(-1)
A 		5.1
(3)
A 		0.9
(-3)
A 		1.1
(-2.7)
A 		4
avr 2.3
(2.3) 		2.4
(3) 		1.5
(-3) 		2.1
(1) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 1.6
(0.8)
A 		1.1
(-0.5)
A 		0.2
(-3)
A 		2.4
(3)
A 		0.5
(-2.2)
A 		0.5
(-2.2)
A 		2
B 2.3
(-0)
A 		0.6
(-3)
A 		3.2
(1.6)
A 		4
(3)
A 		1.1
(-2.1)
A 		1.7
(-1.1)
A 		3
C 0.6
(-2.4)
A 		1.9
(-0.2)
A 		3.9
(3)
A 		0.2
(-3)
A 		0.8
(-2)
A 		0.3
(-2.8)
A 		4
avr 1.5
(-0.4) 		1.2
(-1.5) 		2.4
(3) 		2.2
(2.3) 		0.8
(-3) 		0.8
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188379_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1836
Sequence Type Exemplar sequence
Representative Public ID T26E3.6 NCBI
Target Description T26E3.6 /REP_DB=WormBase Gene ID /WP=CE14194 /TR=O45828 /GB=CAB04833.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=fibrillin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060804(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060804 NCBI Caenorhabditis elegans T26E3.6 (fibrillin) mRNA, complete cds. 11/11 None
GENEFINDER00000034753 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12667850:12669789:1 11/11 None
SNAP00000034746 ENSEMBL cdna:SNAP chromosome:CEL140:I:12669390:12669789:1 11/11 None
T26E3.6 ENSEMBL cdna:known chromosome:CEL140:I:12669478:12669789:1 gene:T26E3.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12669408-12669720(+) 100.0 100.0
Public Domain and Genome References
Gene Title fibrillin
Ensembl T26E3.6
Entrez Gene 188924 Entrez gene
SwissProt O45828 EMBL-EBI
WormBase CE14194 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04833 Hypothetical protein T26E3.6 [Caenorhabditis elegans] ref|NP_493205.1| T26E3.6 [Caenorhabditis elegans] 3.0E-61
blast CAB04833 Hypothetical protein T26E3.6 [Caenorhabditis elegans] ref|NP_493205.1| T26E3.6 [Caenorhabditis elegans] 1.0E-60
blast CAE68016 Hypothetical protein CBG13630 [Caenorhabditis briggsae] 4.0E-14
blast CAE68016 Hypothetical protein CBG13630 [Caenorhabditis briggsae] 1.0E-13
blast CAE68029 Hypothetical protein CBG13645 [Caenorhabditis briggsae] 2.0E-12
blast CAB04831 Hypothetical protein T26E3.5 [Caenorhabditis elegans] ref|NP_493206.1| T26E3.5 [Caenorhabditis elegans] 4.0E-12
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 0.0017
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000034746 1 4-23
Sequence
Target Sequence 
>C. ELEGANS:188379_AT
ccaccgctttctgcgacaacattggcttcttcaaatcaccaactgaaaagcgatgcgaca
aagattacgagtgctctggaactgatttgtgcggacattacgtgtgcacaccattatctg
aatttagaaagtgcccagaggacaaacgttgtggatttgaatacagctgcatgtcaggag
tgtgcagatatatgtctgactttgatgctgaacgccgtttctcaaattttggaccagaca
tgaagtgtaaggacagcagagtttgcccgattggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCACCGCTTTCTGCGACAACATTGG 44 275 20 Antisense
ACAACATTGGCTTCTTCAAATCACC 90 113 35 Antisense
GATGCGACAAAGATTACGAGTGCTC 496 411 71 Antisense
GTGCTCTGGAACTGATTTGTGCGGA 439 479 90 Antisense
TGCGGACATTACGTGTGCACACCAT 276 581 109 Antisense
ACGTGTGCACACCATTATCTGAATT 103 95 119 Antisense
AAGTGCCCAGAGGACAAACGTTGTG 98 159 148 Antisense
ATACAGCTGCATGTCAGGAGTGTGC 237 23 180 Antisense
ATGTCTGACTTTGATGCTGAACGCC 678 47 211 Antisense
GCTGAACGCCGTTTCTCAAATTTTG 611 295 226 Antisense
GGACAGCAGAGTTTGCCCGATTGGT 469 525 270 Antisense
Sequence Source Affymetrix Proprietary Database