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[188378_s_at] ferritin

Description D1037.3 /REP_DB=WormBase Gene ID /WP=CE20622 /TR=Q9TYS3 /GB=AAK21364.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=ferritin
Cluster 6grp_highest_10_10 > 17      6grp_high1_10_10 > 61      4grp_highest_8_8 > 10      4grp_high_8_8 > 54      6grp_highest_nonorm > 28      6grp_total > 61      4grp_total > 56      6grp_highest_sub > 04      6grp_cgc > 84      6grp_high1_sub > 04      6grp_cgc_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5517
1 2 3 4 range
A 8925.6
(-3)
P 		13654.7
(2.1)
P 		14443
(3)
P 		8973.5
(-2.9)
P 		5517
B 10173.3
(-1.4)
P 		11788.5
(1.4)
P 		12717.5
(3)
P 		9236.1
(-3)
P 		3481
C 9149.4
(-3)
P 		11432.3
(1.8)
P 		12012.4
(3)
P 		9143.8
(-3)
P 		2869
avr 9416.1
(-2.5) 		12291.8
(1.8) 		13057.6
(3) 		9117.8
(-3) 		3940

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6115
1 2 3 4 5 6 range
A 9608.3
(-1.7)
P 		9877.3
(-1.3)
P 		11955
(1.3)
P 		13299.3
(3)
P 		10934.4
(0)
P 		8540.4
(-3)
P 		4759
B 7415.5
(-3)
P 		10474
(1.7)
P 		11322.1
(3)
P 		10886.5
(2.3)
P 		10401.5
(1.6)
P 		8498.5
(-1.3)
P 		3907
C 9210.4
(-1.2)
P 		10334.6
(-0.1)
P 		12828.8
(2.4)
P 		13462.5
(3)
P 		9654.8
(-0.7)
P 		7347.1
(-3)
P 		6115
avr 8744.7
(-2.2) 		10228.6
(-0.1) 		12035.3
(2.3) 		12549.4
(3) 		10330.2
(-0) 		8128.7
(-3) 		4421
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2873
1 2 3 4 range
A 3249.8
(1.7)
P 		2964.1
(1)
P 		3775.7
(3)
P 		1313.5
(-3)
P 		2462
B 3244.2
(3)
P 		2911.5
(1.4)
P 		2946.9
(1.6)
P 		1968.2
(-3)
P 		1276
C 3028.7
(0.4)
P 		3286.8
(1)
P 		4186.7
(3)
P 		1541.8
(-3)
P 		2645
avr 3174.2
(1.6) 		3054.1
(1.3) 		3636.4
(3) 		1607.8
(-3) 		2029

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2455
1 2 3 4 5 6 range
A 1771.2
(-3)
P 		3512.9
(3)
P 		2603.5
(-0.1)
P 		3373
(2.5)
P 		3299.5
(2.3)
P 		2079.3
(-1.9)
P 		1742
B 2580.2
(-3)
P 		3486.4
(0.3)
P 		2749.3
(-2.4)
P 		2883.5
(-1.9)
P 		4226
(3)
P 		3169.1
(-0.9)
P 		1646
C 3413.9
(3)
P 		3153.4
(1.4)
P 		3265.1
(2.1)
P 		2707.3
(-1.4)
P 		3124.2
(1.2)
P 		2459.5
(-3)
P 		954
avr 2588.4
(-2.9) 		3384.2
(2) 		2872.6
(-1.1) 		2987.9
(-0.4) 		3549.9
(3) 		2569.3
(-3) 		981
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188378_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.181
Sequence Type Exemplar sequence
Representative Public ID D1037.3 NCBI
Target Description D1037.3 /REP_DB=WormBase Gene ID /WP=CE20622 /TR=Q9TYS3 /GB=AAK21364.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=ferritin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058797(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058797 NCBI Caenorhabditis elegans D1037.3 (ferritin) mRNA, complete cds. 11/11 None
SNAP00000024407 ENSEMBL cdna:SNAP chromosome:CEL140:I:3680292:3681876:-1 11/11 None
GENEFINDER00000024412 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3680292:3680901:-1 11/11 None
D1037.3.2 ENSEMBL cdna:known chromosome:CEL140:I:3679919:3680939:-1 gene:D1037.3 11/11 None
D1037.3.1 ENSEMBL cdna:known chromosome:CEL140:I:3680179:3680946:-1 gene:D1037.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3680291-3680901(-) 100.0 100.0
Public Domain and Genome References
Gene Title ferritin
Gene Symbol ftn-2
Ensembl D1037.3
Entrez Gene 171934 Entrez gene
SwissProt Q9TYS3 EMBL-EBI
WormBase CE20622 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:18934_G_AT ferritin, putative at
ATGENOME1:18933_AT ferritin, putative at
ATH1-121501:263831_AT ferritin, putative at
CANINE:1584161_X_AT ferritin, heavy polypeptide 1 cfa
CANINE:1584189_X_AT ferritin, heavy polypeptide 1 cfa
CANINE:1587048_X_AT ferritin, heavy polypeptide 1 cfa
CANINE:1585914_X_AT ferritin, heavy polypeptide 1 cfa
CANINE:1582464_AT ferritin, heavy polypeptide 1 cfa
CANINE_2:CFA.12987.1.A1_X_AT ferritin, heavy polypeptide 1 cfa
CANINE_2:CFA.698.1.S1_AT ferritin, heavy polypeptide 1 cfa
CANINE_2:CFAAFFX.7666.1.S1_S_AT ferritin, heavy polypeptide 1 cfa
CANINE:1604964_S_AT Ferritin, heavy polypeptide 1 cfa
CANINE:1606136_AT Ferritin, heavy polypeptide 1 cfa
CANINE_2:CFA.12195.3.A1_AT Ferritin, heavy polypeptide 1 cfa
CANINE_2:CFA.12195.4.A1_AT Ferritin, heavy polypeptide 1 cfa
CANINE_2:CFA.698.5.A1_AT Ferritin, heavy polypeptide 1 cfa
CANINE:1585070_AT Ferritin, heavy polypeptide 1 cfa
CANINE:1594378_X_AT Ferritin, heavy polypeptide 1 cfa
CANINE:1594379_X_AT Ferritin, heavy polypeptide 1 cfa
CANINE:1594384_AT Ferritin, heavy polypeptide 1 cfa
CANINE:1594629_S_AT Ferritin, heavy polypeptide 1 cfa
CANINE:1597156_X_AT Ferritin, heavy polypeptide 1 cfa
CANINE:1583419_AT Ferritin, heavy polypeptide 1 cfa
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6826 iron ion transport inferred from electronic annotation QuickGO AmiGO
6879 iron ion homeostasis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5488 binding inferred from electronic annotation QuickGO AmiGO
8199 ferric iron binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK21364 Ferritin protein 2 [Caenorhabditis elegans] ref|NP_491198.1| D1037.3 [Caenorhabditis elegans] 2.0E-84
blast AAK21364 Ferritin protein 2 [Caenorhabditis elegans] ref|NP_491198.1| D1037.3 [Caenorhabditis elegans] 3.0E-84
blast CAE66687 Hypothetical protein CBG12026 [Caenorhabditis briggsae] 2.0E-82
blast CAE66687 Hypothetical protein CBG12026 [Caenorhabditis briggsae] 4.0E-82
Protein Domains
Database ID Description E-Value
Pfam IPR008331 EMBL-EBI Ferritin and Dps 1.9E-64
Pfam IPR008331 EMBL-EBI Ferritin and Dps 1.9E-64
Sequence
Target Sequence 
>C. ELEGANS:188378_S_AT
gctcgtcaaaactaccactccgaggttgaagctgccgttaacaagcagatcaacattgag
ctctatgcctcatacgtctacctttcaatgtcattctatttcgatcgtgacgatgttgcc
cttccaaacattgccaagttcttcaaggaacaatcggatgaggagcgtgagcatgctacc
gagctcatgcgtgtgcagaatcttcgtggaggacgtgtcgtgcttcaggacatccagaag
ccagagaatgatgagtggggaaccgccttgaaggcttttgaagccgcgttggctctcgag
aagttcaacaacgagtcgcttctgaagttgcactcgacagccggaaaccacaacgacgcg
catctcactgactttatcgaggagaaatatttggacgagcaggtcaaatctatcaacgaa
ttcgcccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTCGTCAAAACTACCACTCCGAGG 657 297 22 Antisense
CACTCCGAGGTTGAAGCTGCCGTTA 514 95 37 Antisense
TGAGCTCTATGCCTCATACGTCTAC 245 569 78 Antisense
TACGTCTACCTTTCAATGTCATTCT 136 647 94 Antisense
TGCCCTTCCAAACATTGCCAAGTTC 321 585 138 Antisense
GGAGCGTGAGCATGCTACCGAGCTC 218 521 183 Antisense
CTACCGAGCTCATGCGTGTGCAGAA 1 227 197 Antisense
AGGACGTGTCGTGCTTCAGGACATC 27 55 231 Antisense
GAGTGGGGAACCGCCTTGAAGGCTT 311 425 274 Antisense
AGGCTTTTGAAGCCGCGTTGGCTCT 19 53 293 Antisense
TCAAATCTATCAACGAATTCGCCCG 558 627 425 Antisense
Sequence Source Affymetrix Proprietary Database