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[188376_at] GLN3 like

Description T24D3.1 /REP_DB=WormBase Gene ID /WP=CE03720 /TR=Q22730 /GB=CAA92204.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=GLN3 like
Cluster 6grp_high1_10_10 > 70      6grp_total > 09      4grp_total > 02      6grp_cgc > 0      6grp_high1_sub > 04      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 135
1 2 3 4 range
A 51.1
(-2)
P 		39.8
(-3)
A 		46.5
(-2.4)
A 		110.8
(3)
P 		71
B 55.4
(-2.3)
P 		47
(-3)
A 		89.4
(0.7)
P 		115.6
(3)
P 		69
C 73.1
(-1.7)
P 		78
(-1.4)
M 		43.9
(-3)
P 		174.7
(3)
P 		131
avr 59.9
(-2.6) 		54.9
(-3) 		59.9
(-2.6) 		133.7
(3) 		79

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 95
1 2 3 4 5 6 range
A 101.1
(3)
P 		5.7
(-3)
A 		41.9
(-0.7)
P 		50.7
(-0.2)
M 		51.5
(-0.1)
P 		33.9
(-1.2)
A 		95
B 51.2
(3)
P 		43.2
(1)
A 		48.1
(2.2)
P 		27.3
(-3)
A 		49.7
(2.6)
P 		31.7
(-1.9)
A 		24
C 54.3
(0.3)
P 		72
(1.7)
P 		43
(-0.7)
A 		88.2
(3)
P 		14.2
(-3)
A 		35.2
(-1.3)
P 		74
avr 68.9
(3) 		40.3
(-1.9) 		44.3
(-1.2) 		55.4
(0.7) 		38.5
(-2.2) 		33.6
(-3) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 18.6
(3)
P 		8.6
(-3)
A 		12.2
(-0.8)
A 		16.2
(1.6)
P 		10
B 17.7
(-0.2)
P 		11.6
(-3)
A 		20.7
(1.2)
P 		24.6
(3)
P 		13
C 24.2
(0.8)
P 		22.4
(-0)
M 		15.3
(-3)
P 		29.5
(3)
P 		14
avr 20.2
(0.9) 		14.2
(-3) 		16.1
(-1.8) 		23.4
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 18.6
(3)
P 		2
(-3)
A 		9.1
(-0.4)
P 		12.9
(0.9)
M 		15.5
(1.9)
P 		8.2
(-0.8)
A 		17
B 17.8
(1.9)
P 		14.4
(0.3)
A 		11.7
(-0.9)
P 		7.2
(-3)
A 		20.2
(3)
P 		11.8
(-0.9)
A 		13
C 20.1
(2.3)
P 		22
(3)
P 		10.9
(-0.8)
A 		17.7
(1.5)
P 		4.6
(-3)
A 		11.8
(-0.5)
P 		17
avr 18.8
(3) 		12.8
(-1.4) 		10.6
(-3) 		12.6
(-1.5) 		13.4
(-1) 		10.6
(-3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188376_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17197
Sequence Type Exemplar sequence
Representative Public ID T24D3.1 NCBI
Target Description T24D3.1 /REP_DB=WormBase Gene ID /WP=CE03720 /TR=Q22730 /GB=CAA92204.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=GLN3 like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077683(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077683 NCBI Caenorhabditis elegans Mesoderm and Endoderm Determination family member (med-1) (med-1) mRNA, complete cds. 9/11 None
SNAP00000020725 ENSEMBL cdna:SNAP chromosome:CEL140:X:12430531:12431055:1 9/11 None
T24D3.1 ENSEMBL cdna:known chromosome:CEL140:X:12430531:12431055:1 gene:T24D3.1 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_066096 5/11 Cross Hyb Matching Probes None
SNAP00000012107 5/11 Cross Hyb Matching Probes None
GENEFINDER00000012118 5/11 Cross Hyb Matching Probes None
K04C2.6 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12430530-12431334(+) 100.0 100.0
Public Domain and Genome References
Gene Title GLN3 like
Gene Symbol med-1
Ensembl T24D3.1
Entrez Gene 191705 Entrez gene
SwissProt Q9GSP3 EMBL-EBI
WormBase CE35028 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92204 Hypothetical protein T24D3.1 [Caenorhabditis elegans] ref|NP_510084.2| Mesoderm and Endoderm Determination family member (med-1) [Caenorhabditis elegans] gb|AAG21385.1| GATA-type transcription factor [Caenorhabditis elegans] 1.0E-56
blast AAK93857 Mesoderm and endoderm determination protein 2 [Caenorhabditis elegans] ref|NP_498497.1| Mesoderm and Endoderm Determination family member (med-2) [Caenorhabditis elegans] gb|AAG21386.1| GATA-type transcription factor [Caenorhabditis elegans] 5.0E-55
blast T25237 hypothetical protein T24D3.1 - Caenorhabditis elegans 9.0E-55
Protein Domains
Database ID Description E-Value
Pfam IPR000679 EMBL-EBI Zn-finger, GATA type 4.5E-15
Sequence
Target Sequence 
>C. ELEGANS:188376_AT
atgtctttgacaatacccagcaacaagttggattctatgattattcaactccattcaatg
gtacatactcctttactactgactattcttattataataactactatgactatgtcaata
cttatgcttcttattatccaactgcaatggattcttcatctttaaatatttcatcaacta
ctggaagtcctaattcttcacatttcaccacgtttactcatttttccactccatctacat
ctccatctacctctactcaaagttcaactacaccgagcaattctgataataagaagtcat
ttcaatgctcaaattgttcagtaactgaaacaattcgttggaggaatattcgatcaaagg
aaggaattcaatgtaatgcttgtttcatttatcaacggaaatataataagactcgtccag
tcactgccgttaacaaatatcaaaaaagaaaattaaaggtacaggaaacgaatggtagga
ataaatttaaaattaacaaaccctgtatcgttttgaacttttgttctttgttttcccaac
agcgctgttcatttttttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTCTTTGACAATACCCAGCAACA 147 49 47 Antisense
GGTACATACTCCTTTACTACTGACT 296 503 106 Antisense
GACTATGTCAATACTTATGCTTCTT 438 373 154 Antisense
AAGTCCTAATTCTTCACATTTCACC 529 157 231 Antisense
ACATTTCACCACGTTTACTCATTTT 615 105 246 Antisense
TCCATCTACCTCTACTCAAAGTTCA 187 591 288 Antisense
AGTTCAACTACACCGAGCAATTCTG 447 61 307 Antisense
TAATAAGACTCGTCCAGTCACTGCC 633 633 450 Antisense
GTCCAGTCACTGCCGTTAACAAATA 185 477 461 Antisense
TTTGTTCTTTGTTTTCCCAACAGCG 437 613 566 Antisense
CCAACAGCGCTGTTCATTTTTTTCA 530 275 582 Antisense
Sequence Source Affymetrix Proprietary Database