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[188374_s_at] --- /// DNA-binding protein

Description ZK380.1 /REP_DB=WormBase Gene ID /WP=CE26339 /GB=AAC17010.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=DNA-binding protein
Cluster 6grp_total > 64      4grp_total > 02      6grp_cgc > 56      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 0.8
(-2.9)
A 		2
(-2.6)
A 		0.6
(-3)
A 		21.2
(3)
A 		21
B 0.6
(-3)
A 		1
(-1.7)
A 		1.2
(-1.1)
A 		2.5
(3)
A 		2
C 1.6
(-2.4)
A 		0.8
(-2.8)
A 		0.5
(-3)
A 		11.2
(3)
A 		11
avr 1
(-2.9) 		1.3
(-2.7) 		0.8
(-3) 		11.6
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 0.6
(-2.8)
A 		0.5
(-3)
A 		2.4
(1.1)
A 		1.9
(-0)
A 		0.7
(-2.6)
A 		3.3
(3)
A 		3
B 0.3
(-3)
A 		0.5
(-1.5)
A 		1
(2.3)
A 		1.1
(3)
A 		0.5
(-1.5)
A 		0.8
(0.8)
A 		1
C 0.6
(-2.8)
A 		0.5
(-3)
A 		3.2
(3)
A 		0.8
(-2.3)
A 		0.6
(-2.8)
A 		0.7
(-2.6)
A 		3
avr 0.5
(-3) 		0.5
(-3) 		2.2
(3) 		1.3
(-0.2) 		0.6
(-2.6) 		1.6
(0.9) 		2
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 0.3
(-2.8)
A 		0.4
(-2.6)
A 		0.2
(-3)
A 		3.1
(3)
A 		3
B 0.2
(-3)
A 		0.2
(-3)
A 		0.3
(-1)
A 		0.5
(3)
A 		0
C 0.5
(-1.9)
A 		0.2
(-3)
A 		0.2
(-3)
A 		1.9
(3)
A 		2
avr 0.3
(-2.6) 		0.3
(-2.6) 		0.2
(-3) 		1.8
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 0.1
(-3)
A 		0.2
(-2.1)
A 		0.5
(0.4)
A 		0.5
(0.4)
A 		0.2
(-2.1)
A 		0.8
(3)
A 		1
B 0.1
(-3)
A 		0.2
(0)
A 		0.3
(3)
A 		0.3
(3)
A 		0.2
(0)
A 		0.3
(3)
A 		0
C 0.2
(-2.1)
A 		0.1
(-3)
A 		0.8
(3)
A 		0.2
(-2.1)
A 		0.2
(-2.1)
A 		0.2
(-2.1)
A 		1
avr 0.1
(-3) 		0.2
(-1.5) 		0.5
(3) 		0.3
(-0) 		0.2
(-1.5) 		0.4
(1.5) 		0
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188374_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18112
Sequence Type Exemplar sequence
Representative Public ID ZK380.1 NCBI
Target Description ZK380.1 /REP_DB=WormBase Gene ID /WP=CE26339 /GB=AAC17010.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=DNA-binding protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075903(11), NM_075907(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075903 NCBI Caenorhabditis elegans T BoX family member (tbx-32) (tbx-32) mRNA, complete cds. 11/11 A 
NM_075907 NCBI Caenorhabditis elegans T BoX family member (tbx-31) (tbx-31) mRNA, complete cds. 11/11 A 
GENEFINDER00000005679 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1667163:1674151:-1 11/11 None
SNAP00000005670 ENSEMBL cdna:SNAP chromosome:CEL140:X:1672456:1674151:-1 11/11 None
ZK380.1 ENSEMBL cdna:known chromosome:CEL140:X:1654432:1656931:1 gene:ZK380.1 11/11 A 
C36C9.2 ENSEMBL cdna:known chromosome:CEL140:X:1671143:1674151:-1 gene:C36C9.2 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000042963 6/11 Cross Hyb Matching Probes None
GENEFINDER00000042964 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1654579-1656931(+) 100.0 100.0
Public Domain and Genome References
Gene Title
DNA-binding protein
Gene Symbol tbx-31
tbx-32
Ensembl ZK380.1
C36C9.2
Entrez Gene 183272 Entrez gene
191303 Entrez gene
SwissProt Q9TZL0 EMBL-EBI
O61764 EMBL-EBI
WormBase CE19721 Wormbase
CE26339 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC17010 T box family protein 32 [Caenorhabditis elegans] ref|NP_508304.1| T BoX family member (tbx-32) [Caenorhabditis elegans] sp|O61764|TBX32_CAEEL Putative T-box protein 0.0
blast E89467 protein ZK380.1 [imported] - Caenorhabditis elegans pir||T33067 hypothetical protein ZK380.1 - Caenorhabditis elegans (fragment) 0.0
blast NP_508308 T BoX family member (tbx-31) [Caenorhabditis elegans] gb|AAC67425.1| T box family protein 31 [Caenorhabditis elegans] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508304.1 1 45-67
ZK380.1 1 45-67
Sequence
Target Sequence 
>C. ELEGANS:188374_S_AT
gtgaagaattcgacgctgtttttgaatacatcgatcaacagttttcaaaccacgatcaaa
atccaatggatcagcaatcaaaatcaattgatttaaatcaaacaacatggacttcccaat
caatcaataatcaaagctacctgtccaccgcaagtagtcctgctgcattgaatcaggatt
cttttgcttctgagaaatcaagcattgtccgtgataagaagaacgatgaaaattgtctgg
acgaattcgacagagttttcaatgagcttgatcaacaatttacaccgacagaaaatcaac
ttcaagatctctccaattgcaccacatggaatcaggaacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGAAGAATTCGACGCTGTTTTTGA 375 481 1199 Antisense
GACGCTGTTTTTGAATACATCGATC 265 381 1210 Antisense
GAATACATCGATCAACAGTTTTCAA 406 325 1222 Antisense
GTTTTCAAACCACGATCAAAATCCA 300 447 1239 Antisense
AAATCCAATGGATCAGCAATCAAAA 513 117 1257 Antisense
GCAAGTAGTCCTGCTGCATTGAATC 345 321 1348 Antisense
CTGAGAAATCAAGCATTGTCCGTGA 288 239 1388 Antisense
AATTGTCTGGACGAATTCGACAGAG 319 175 1429 Antisense
TTCGACAGAGTTTTCAATGAGCTTG 605 695 1444 Antisense
TTCAAGATCTCTCCAATTGCACCAC 509 685 1499 Antisense
ATTGCACCACATGGAATCAGGAACC 699 5 1514 Antisense
Sequence Source Affymetrix Proprietary Database