[Home] | [Total List]

[188373_at] DNA-binding protein

Description ZK380.1 /REP_DB=WormBase Gene ID /WP=CE26339 /GB=AAC17010.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=DNA-binding protein
Cluster 6grp_total > 74      4grp_total > 27      6grp_cgc > 76      6grp_cgc_sub > 03_04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 0.9
(-2.8)
A 		14.2
(0.5)
A 		0.3
(-3)
A 		24.2
(3)
A 		24
B 0.1
(-3)
A 		9.8
(3)
A 		1.6
(-2.1)
A 		4
(-0.6)
A 		10
C 4.6
(3)
A 		1.3
(-1.8)
A 		0.5
(-3)
A 		0.9
(-2.4)
A 		4
avr 1.9
(-2.3) 		8.4
(2.1) 		0.8
(-3) 		9.7
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 0.4
(-3)
A 		1.7
(2.2)
A 		0.6
(-2.2)
A 		0.5
(-2.6)
A 		1.9
(3)
A 		1
(-0.6)
A 		2
B 0.8
(-2.8)
A 		1.7
(-2.3)
A 		10.7
(3)
A 		1
(-2.7)
A 		7.1
(0.9)
A 		0.5
(-3)
A 		10
C 0.8
(-3)
A 		1.5
(-2.8)
A 		2.1
(-2.5)
A 		18
(3)
A 		7.5
(-0.7)
A 		14
(1.6)
A 		17
avr 0.7
(-3) 		1.6
(-2.1) 		4.5
(0.9) 		6.5
(3) 		5.5
(2) 		5.2
(1.7) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 0.3
(-2.6)
A 		3.1
(2.3)
A 		0.1
(-3)
A 		3.5
(3)
A 		3
B 0
(-3)
A 		2.4
(3)
A 		0.4
(-2)
A 		0.9
(-0.8)
A 		2
C 1.5
(3)
A 		0.4
(-2.1)
A 		0.2
(-3)
A 		0.2
(-3)
A 		1
avr 0.6
(-1.7) 		2
(3) 		0.2
(-3) 		1.5
(1.3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 0.1
(-3)
A 		0.6
(3)
A 		0.1
(-3)
A 		0.1
(-3)
A 		0.6
(3)
A 		0.2
(-1.8)
A 		1
B 0.3
(-2.8)
A 		0.6
(-2.1)
A 		2.6
(2.3)
A 		0.3
(-2.8)
A 		2.9
(3)
A 		0.2
(-3)
A 		3
C 0.3
(-3)
A 		0.5
(-2.7)
A 		0.5
(-2.7)
A 		3.6
(1.5)
A 		2.4
(-0.1)
A 		4.7
(3)
A 		4
avr 0.2
(-3) 		0.6
(-1.7) 		1.1
(0) 		1.3
(0.7) 		2
(3) 		1.7
(2) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188373_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18112
Sequence Type Exemplar sequence
Representative Public ID ZK380.1 NCBI
Target Description ZK380.1 /REP_DB=WormBase Gene ID /WP=CE26339 /GB=AAC17010.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=DNA-binding protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075903(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075903 NCBI Caenorhabditis elegans T BoX family member (tbx-32) (tbx-32) mRNA, complete cds. 11/11 A 
ZK380.1 ENSEMBL cdna:known chromosome:CEL140:X:1654432:1656931:1 gene:ZK380.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000026606 4/11 Cross Hyb Matching Probes None
SNAP00000042963 6/11 Cross Hyb Matching Probes None
GENEFINDER00000042964 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1654579-1656931(+) 100.0 100.0
Public Domain and Genome References
Gene Title DNA-binding protein
Gene Symbol tbx-32
Ensembl ZK380.1
Entrez Gene 191303 Entrez gene
SwissProt O61764 EMBL-EBI
WormBase CE26339 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC17010 T box family protein 32 [Caenorhabditis elegans] ref|NP_508304.1| T BoX family member (tbx-32) [Caenorhabditis elegans] sp|O61764|TBX32_CAEEL Putative T-box protein 0.0
blast E89467 protein ZK380.1 [imported] - Caenorhabditis elegans pir||T33067 hypothetical protein ZK380.1 - Caenorhabditis elegans (fragment) 0.0
blast NP_508308 T BoX family member (tbx-31) [Caenorhabditis elegans] gb|AAC67425.1| T box family protein 31 [Caenorhabditis elegans] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508304.1 1 45-67
ZK380.1 1 45-67
Sequence
Target Sequence 
>C. ELEGANS:188373_AT
tggcattccaacaagattttaccgaagagtttggcacaatttctcaattggacgcttatg
ttaatgtcaatgtgcaaagctgcagttcaagcagtcttagtagtccagcagcattgcaac
aagactctactgtgagttctgacaatgattttgatgataagaacagtgaagaattcgacg
ctgtttttgaatacatcgatcaacagttttcaaaccacgatcaaaatccaatggatcagc
aatcaaaatcaattgatttaaatcaaacaacatggacttcccaatcaatcaataatcaaa
gctacctgtccaccgcaagtagtcctgctgcattgaatcaggattcttttgcttctgaga
aatcaagcattgtccgtgataagaagaacgatgaaaattgtctggacgaattcgacagag
ttttcaatgagcttgatcaacaatttacaccgacagaaaatcaacttcaagatctctcca
attgcaccacatggaatcaggaaccaatcaataattcaattcaatcaaatcagcttaaca
ataacattgctccagctcttgaagaaaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGCATTCCAACAAGATTTTACCGA 353 545 1034 Antisense
AAGAGTTTGGCACAATTTCTCAATT 630 153 1058 Antisense
AATTTCTCAATTGGACGCTTATGTT 298 175 1071 Antisense
GTCCAGCAGCATTGCAACAAGACTC 328 477 1136 Antisense
GCATTGCAACAAGACTCTACTGTGA 665 307 1144 Antisense
ACAACATGGACTTCCCAATCAATCA 629 111 1300 Antisense
AATCAATAATCAAAGCTACCTGTCC 533 171 1320 Antisense
CTTGATCAACAATTTACACCGACAG 267 217 1465 Antisense
GAAAATCAACTTCAAGATCTCTCCA 402 353 1489 Antisense
AACAATAACATTGCTCCAGCTCTTG 685 133 1570 Antisense
CATTGCTCCAGCTCTTGAAGAAAAC 11 217 1578 Antisense
Sequence Source Affymetrix Proprietary Database