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[188371_at]

Description C08H9.4 /REP_DB=WormBase Gene ID /WP=CE02990 /TR=Q17838 /GB=CAA91151.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=chitinase
Cluster 6grp_high1_10_10 > 34      4grp_high_8_8 > 0      6grp_total > 01      4grp_total > 06      6grp_high1_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 44
(-1.4)
A 		36.3
(-3)
A 		43.1
(-1.5)
P 		64.4
(3)
A 		28
B 53.1
(-1)
P 		37.9
(-3)
A 		83
(3)
P 		63.6
(0.4)
P 		45
C 56.1
(3)
P 		39.6
(0.2)
P 		21
(-3)
P 		52.5
(2.4)
P 		35
avr 51.1
(0.6) 		37.9
(-3) 		49
(-0) 		60.2
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 56.1
(3)
P 		44.7
(-2.5)
A 		50.3
(0.2)
P 		47.1
(-1.3)
A 		43.6
(-3)
M 		50.3
(0.2)
A 		13
B 44.6
(0.1)
P 		68.5
(3)
P 		18.2
(-3)
A 		41.5
(-0.2)
P 		48.3
(0.6)
P 		38.6
(-0.6)
A 		50
C 35.6
(-3)
P 		72
(3)
P 		64.7
(1.8)
A 		50.3
(-0.6)
P 		40.2
(-2.2)
P 		47.2
(-1.1)
P 		36
avr 45.4
(-2.5) 		61.7
(3) 		44.4
(-2.9) 		46.3
(-2.2) 		44
(-3) 		45.4
(-2.5) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 16
(3)
A 		7.9
(-3)
A 		11.3
(-0.5)
P 		9.4
(-1.9)
A 		8
B 16.9
(1.6)
P 		9.4
(-3)
A 		19.2
(3)
P 		13.6
(-0.4)
P 		10
C 18.6
(3)
P 		11.4
(-0.8)
P 		7.3
(-3)
P 		8.9
(-2.2)
P 		11
avr 17.2
(3) 		9.6
(-3) 		12.6
(-0.6) 		10.6
(-2.2) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 10.3
(-3)
P 		15.9
(3)
A 		10.9
(-2.4)
P 		12
(-1.2)
A 		13.2
(0.1)
M 		12.2
(-1)
A 		6
B 15.5
(0.6)
P 		22.8
(3)
P 		4.4
(-3)
A 		11
(-0.8)
P 		19.6
(2)
P 		14.4
(0.3)
A 		18
C 13.2
(-1.4)
P 		22
(3)
P 		16.5
(0.2)
A 		10.1
(-3)
P 		13
(-1.5)
P 		15.8
(-0.1)
P 		12
avr 13
(-1.5) 		20.2
(3) 		10.6
(-3) 		11
(-2.8) 		15.3
(-0.1) 		14.1
(-0.8) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188371_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2722
Sequence Type Exemplar sequence
Representative Public ID C08H9.4 NCBI
Target Description C08H9.4 /REP_DB=WormBase Gene ID /WP=CE02990 /TR=Q17838 /GB=CAA91151.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=chitinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063728
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000001371 ENSEMBL cdna:SNAP chromosome:CEL140:II:9862342:9863328:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000001390 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9862338-9864279(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91149 Hypothetical protein C08H9.12 [Caenorhabditis elegans] ref|NP_496126.1| C08H9.12 [Caenorhabditis elegans] 1.0E-138
blast CAA90145 Hypothetical protein ZK938.6 [Caenorhabditis elegans] ref|NP_496122.1| ZK938.6 [Caenorhabditis elegans] 1.0E-138
blast CAA91147 Hypothetical protein C08H9.10 [Caenorhabditis elegans] ref|NP_496125.1| C08H9.10 [Caenorhabditis elegans] 1.0E-130
Protein Domains
Database ID Description E-Value
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 2.0E-83
Sequence
Target Sequence 
>C. ELEGANS:188371_AT
tgatcagtttagtggcctccagcaatctcaacctattattcaatttggtggaattcttga
attctgtcgacttttttggcatttacttgtttaatagttattcatatcaagttggaccag
actcaccgttgtacggaggaggaagtagaaacgtcgatgagattatgaaatattatattt
gtaaaactggtcagccaagtaaatttaatattattatttcgttccacgcaacatattggg
aaggcaccgatttaccattacgtgatgattctgataatatatggaaagttaacgaatcgg
gaagattagcagttgctttacgttggagagaactacctcatcataaatggaacctggaga
acattaaatttcataatctaacgaaaacttcgtatatttggattcctggtccacctaccc
ggtttttgactttagaagacgaacaaagtttgagagaaaaaaaccgttatgttgctgatc
at

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGATCAGTTTAGTGGCCTCCAGCAA 555 565 800 Antisense
CTCCAGCAATCTCAACCTATTATTC 152 235 816 Antisense
AATTCTTGAATTCTGTCGACTTTTT 620 175 851 Antisense
GTCGACTTTTTTGGCATTTACTTGT 260 475 865 Antisense
ATAGTTATTCATATCAAGTTGGACC 255 3 893 Antisense
AATATTATTATTTCGTTCCACGCAA 469 173 1006 Antisense
GGAAGGCACCGATTTACCATTACGT 181 531 1038 Antisense
TTAGCAGTTGCTTTACGTTGGAGAG 209 681 1105 Antisense
ACGTTGGAGAGAACTACCTCATCAT 34 95 1119 Antisense
ACTACCTCATCATAAATGGAACCTG 494 99 1131 Antisense
AAAAAACCGTTATGTTGCTGATCAT 247 127 1257 Antisense
Sequence Source Affymetrix Proprietary Database