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[188370_s_at]

Description C08B6.4 /REP_DB=WormBase Gene ID /WP=CE05241 /TR=Q17816 /GB=CAA96587.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=chitinase
Cluster 6grp_highest_10_10 > 39      6grp_high1_10_10 > 93      4grp_high_8_8 > 60      6grp_highest_nonorm > 90      6grp_total > 84      4grp_total > 59      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 125.2
(0.8)
P 		136.6
(1.6)
P 		155.5
(3)
P 		72.7
(-3)
M 		83
B 119.5
(2.3)
P 		121.8
(2.5)
P 		126.2
(3)
P 		71.1
(-3)
P 		55
C 112.9
(-3)
P 		147.8
(1.9)
P 		155.3
(3)
P 		132.5
(-0.2)
M 		42
avr 119.2
(0) 		135.4
(1.8) 		145.7
(3) 		92.1
(-3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 164
1 2 3 4 5 6 range
A 112.9
(-1.6)
P 		105.9
(-2)
P 		87.7
(-3)
P 		197.8
(3)
P 		121
(-1.2)
P 		173.4
(1.7)
P 		110
B 131.8
(-0.2)
P 		83.7
(-3)
P 		108.5
(-1.5)
P 		168.3
(2)
P 		185.8
(3)
P 		145
(0.6)
P 		102
C 175.8
(0.9)
P 		70.6
(-3)
P 		120.6
(-1.2)
P 		184.7
(1.2)
P 		234.3
(3)
P 		144.8
(-0.3)
P 		164
avr 140.2
(0.3) 		86.7
(-3) 		105.6
(-1.8) 		183.6
(3) 		180.4
(2.8) 		154.4
(1.2) 		97
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 45.6
(3)
P 		29.7
(0.3)
P 		40.7
(2.2)
P 		10.6
(-3)
M 		35
B 38.1
(3)
P 		30.1
(0.9)
P 		29.2
(0.7)
P 		15.2
(-3)
P 		23
C 37.4
(-0.2)
P 		42.5
(0.8)
P 		54.1
(3)
P 		22.3
(-3)
M 		32
avr 40.4
(2.8) 		34.1
(1.3) 		41.3
(3) 		16
(-3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 20.8
(-2.7)
P 		37.7
(0.6)
P 		19.1
(-3)
P 		50.2
(3)
P 		36.5
(0.4)
P 		42.2
(1.5)
P 		31
B 45.9
(-0.6)
P 		27.9
(-2.8)
P 		26.3
(-3)
P 		44.6
(-0.8)
P 		75.5
(3)
P 		54.1
(0.4)
P 		49
C 65.1
(1.8)
P 		21.6
(-3)
P 		30.7
(-2)
P 		37.2
(-1.3)
P 		75.8
(3)
P 		48.5
(-0)
P 		54
avr 43.9
(-0) 		29.1
(-2.4) 		25.4
(-3) 		44
(0) 		62.6
(3) 		48.3
(0.7) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188370_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12377
Sequence Type Exemplar sequence
Representative Public ID C08B6.4 NCBI
Target Description C08B6.4 /REP_DB=WormBase Gene ID /WP=CE05241 /TR=Q17816 /GB=CAA96587.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=chitinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028464(11), NM_001028463(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028464 NCBI Caenorhabditis elegans C08B6.4b (chitinase) mRNA, complete cds. 11/11 None
NM_001028463 NCBI Caenorhabditis elegans C08B6.4a (chitinase) mRNA, complete cds. 11/11 None
SNAP00000004950 ENSEMBL cdna:SNAP chromosome:CEL140:V:10118177:10119793:1 11/11 None
GENEFINDER00000004969 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10118177:10119793:1 11/11 None
C08B6.4b ENSEMBL cdna:known chromosome:CEL140:V:10117346:10119894:1 gene:C08B6.4 11/11 None
C08B6.4a ENSEMBL cdna:known chromosome:CEL140:V:10117394:10119793:1 gene:C08B6.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10118176-10119793(+) 100.0 100.0
Public Domain and Genome References
Ensembl C08B6.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAH19081 Hypothetical protein C08B6.4b [Caenorhabditis elegans] ref|NP_001023635.1| C08B6.4b [Caenorhabditis elegans] 0.0
blast CAA96587 Hypothetical protein C08B6.4a [Caenorhabditis elegans] ref|NP_001023634.1| C08B6.4a [Caenorhabditis elegans] 0.0
blast CAE64733 Hypothetical protein CBG09520 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000726 EMBL-EBI Glycoside hydrolase, family 19 8.1E-9
Pfam IPR000726 EMBL-EBI Glycoside hydrolase, family 19 4.0E-22
Pfam IPR000726 EMBL-EBI Glycoside hydrolase, family 19 8.1E-9
Pfam IPR000726 EMBL-EBI Glycoside hydrolase, family 19 4.0E-22
Sequence
Target Sequence 
>C. ELEGANS:188370_S_AT
cctggaaagatgttccatgcacttgtgcaccagccagttatggaggtctcattttctatt
atgatcctgactactatccatctagttttgctgctcaaaacgactacaaccgtattaagt
gtattgcgagtatctatgcgaacccat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCTGGAAAGATGTTCCATGCACTTG 574 265 1163 Antisense
CACTTGTGCACCAGCCAGTTATGGA 86 197 1182 Antisense
GCACCAGCCAGTTATGGAGGTCTCA 274 315 1189 Antisense
TATGGAGGTCTCATTTTCTATTATG 302 655 1201 Antisense
ATTTTCTATTATGATCCTGACTACT 357 15 1213 Antisense
ATGATCCTGACTACTATCCATCTAG 301 47 1223 Antisense
CTATCCATCTAGTTTTGCTGCTCAA 402 225 1236 Antisense
TTGCTGCTCAAAACGACTACAACCG 200 703 1250 Antisense
GCTCAAAACGACTACAACCGTATTA 406 285 1255 Antisense
AACCGTATTAAGTGTATTGCGAGTA 190 103 1270 Antisense
ATTGCGAGTATCTATGCGAACCCAT 297 7 1285 Antisense
Sequence Source Affymetrix Proprietary Database