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[188369_at]

Description C08B6.4 /REP_DB=WormBase Gene ID /WP=CE05241 /TR=Q17816 /GB=CAA96587.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=chitinase
Cluster 6grp_high1_10_10 > 93      4grp_high_8_8 > 53      6grp_total > 95      4grp_total > 58      6grp_high1_sub > 04      6grp_total_sub > Increase      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 183
1 2 3 4 range
A 108.6
(-1.1)
P 		232
(3)
P 		163.5
(0.7)
P 		49.5
(-3)
A 		183
B 113.9
(-1)
P 		157.8
(0.6)
P 		223.8
(3)
P 		57.2
(-3)
A 		167
C 103.5
(-0.9)
P 		170.3
(2.7)
P 		176
(3)
P 		64.6
(-3)
P 		111
avr 108.7
(-0.6) 		186.7
(2.9) 		187.8
(3) 		57.1
(-3) 		131

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 154.1
(2.2)
P 		110.8
(-3)
P 		130.1
(-0.7)
P 		144.8
(1.1)
P 		160.6
(3)
P 		148
(1.5)
P 		50
B 130.5
(0.8)
P 		127.2
(0.3)
P 		107.6
(-3)
P 		143.1
(2.9)
P 		143.6
(3)
P 		139.7
(2.4)
P 		36
C 156.6
(1.2)
P 		131
(-0.6)
P 		96.5
(-3)
M 		182.8
(3)
P 		137.5
(-0.1)
P 		166.3
(1.9)
P 		86
avr 147.1
(1.7) 		123
(-1.5) 		111.4
(-3) 		156.9
(3) 		147.2
(1.7) 		151.3
(2.3) 		46
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 39.6
(1.5)
P 		50.4
(3)
P 		42.7
(1.9)
P 		7.2
(-3)
A 		43
B 36.3
(0.6)
P 		39
(1.1)
P 		51.9
(3)
P 		12.2
(-3)
A 		40
C 34.3
(-0.2)
P 		49
(1.5)
P 		61.4
(3)
P 		10.9
(-3)
P 		51
avr 36.7
(0.8) 		46.1
(2.2) 		52
(3) 		10.1
(-3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 28.4
(-3)
P 		39.4
(0.3)
P 		28.3
(-3)
P 		36.7
(-0.5)
P 		48.5
(3)
P 		36
(-0.7)
P 		20
B 45.4
(0.6)
P 		42.3
(0)
P 		26.1
(-3)
P 		37.9
(-0.8)
P 		58.4
(3)
P 		52.1
(1.8)
P 		32
C 58.1
(3)
P 		40
(-0.2)
P 		24.6
(-3)
M 		36.8
(-0.8)
P 		44.5
(0.6)
P 		55.7
(2.6)
P 		34
avr 44
(1.4) 		40.6
(0.5) 		26.3
(-3) 		37.1
(-0.3) 		50.5
(3) 		47.9
(2.4) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188369_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12377
Sequence Type Exemplar sequence
Representative Public ID C08B6.4 NCBI
Target Description C08B6.4 /REP_DB=WormBase Gene ID /WP=CE05241 /TR=Q17816 /GB=CAA96587.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=chitinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028464(11), NM_001028463(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028464 NCBI Caenorhabditis elegans C08B6.4b (chitinase) mRNA, complete cds. 11/11 None
NM_001028463 NCBI Caenorhabditis elegans C08B6.4a (chitinase) mRNA, complete cds. 11/11 None
SNAP00000004950 ENSEMBL cdna:SNAP chromosome:CEL140:V:10118177:10119793:1 11/11 None
GENEFINDER00000004969 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10118177:10119793:1 11/11 None
C08B6.4b ENSEMBL cdna:known chromosome:CEL140:V:10117346:10119894:1 gene:C08B6.4 11/11 None
C08B6.4a ENSEMBL cdna:known chromosome:CEL140:V:10117394:10119793:1 gene:C08B6.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10118176-10119793(+) 100.0 100.0
Public Domain and Genome References
Ensembl C08B6.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAH19081 Hypothetical protein C08B6.4b [Caenorhabditis elegans] ref|NP_001023635.1| C08B6.4b [Caenorhabditis elegans] 0.0
blast CAA96587 Hypothetical protein C08B6.4a [Caenorhabditis elegans] ref|NP_001023634.1| C08B6.4a [Caenorhabditis elegans] 0.0
blast CAE64733 Hypothetical protein CBG09520 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000726 EMBL-EBI Glycoside hydrolase, family 19 8.1E-9
Pfam IPR000726 EMBL-EBI Glycoside hydrolase, family 19 4.0E-22
Pfam IPR000726 EMBL-EBI Glycoside hydrolase, family 19 8.1E-9
Pfam IPR000726 EMBL-EBI Glycoside hydrolase, family 19 4.0E-22
Sequence
Target Sequence 
>C. ELEGANS:188369_AT
accacccaaacctgcaatgcatgatattgtaatgggaaactggaatagtggagcaaagaa
tgcagcagctggatatgatggaccgatctttgggccaacttcattgataatcaacaatga
atgttctggagaagatccaacaaatccaggaggtccaggagaatctagaagaatcaaggc
attcaaatggttttgtggttactttgacactccaacaggaccggaggcgaccctctcttg
taaaaacatgcctgtaccactggatcaaattttctataatctgagttatcagcctgattg
gacatccacctggaaagatgttccatgcacttgtgcaccagccagttatggaggtctcat
tttctattatgatcctgactactatccatctagttttgctgctcaaaacgactacaaccg
tattaagtgtattgcgagtatctatgcgaacccatccatgtattctatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCACCCAAACCTGCAATGCATGAT 325 85 855 Antisense
TGATGGACCGATCTTTGGGCCAACT 616 565 930 Antisense
GGGCCAACTTCATTGATAATCAACA 241 493 946 Antisense
GTTTTGTGGTTACTTTGACACTCCA 490 447 1044 Antisense
GACACTCCAACAGGACCGGAGGCGA 352 367 1060 Antisense
GCGACCCTCTCTTGTAAAAACATGC 186 289 1081 Antisense
AAACATGCCTGTACCACTGGATCAA 584 127 1098 Antisense
GTACCACTGGATCAAATTTTCTATA 545 457 1108 Antisense
TTATCAGCCTGATTGGACATCCACC 620 679 1140 Antisense
GCCTGATTGGACATCCACCTGGAAA 517 283 1146 Antisense
TGCGAACCCATCCATGTATTCTATG 345 583 1299 Antisense
Sequence Source Affymetrix Proprietary Database