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[188367_at] ankyrin

Description D2021.8 /REP_DB=WormBase Gene ID /WP=CE02585 /TR=Q18970 /GB=AAB36862.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=ankyrin
Cluster 6grp_high1_10_10 > 24      4grp_high_8_8 > 31      6grp_total > 01      4grp_total > 24      6grp_high1_sub > 02      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 231
1 2 3 4 range
A 134.3
(-3)
P 		166.9
(-2.2)
P 		234.7
(-0.4)
P 		365.4
(3)
P 		231
B 152.4
(-3)
P 		204.9
(-0.4)
A 		210.8
(-0.1)
A 		274.8
(3)
P 		122
C 149
(-3)
P 		250.3
(1.7)
P 		277.2
(3)
P 		211
(-0.1)
P 		128
avr 145.2
(-3) 		207.4
(-0.3) 		240.9
(1.1) 		283.7
(3) 		139

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 159
1 2 3 4 5 6 range
A 168.1
(-0.7)
A 		245.1
(3)
P 		135.3
(-2.3)
P 		121.6
(-3)
M 		140.6
(-2.1)
A 		190.2
(0.3)
A 		124
B 116.1
(-3)
P 		176
(3)
P 		117.3
(-2.9)
A 		124.9
(-2.1)
P 		145.1
(-0.1)
P 		140.8
(-0.5)
P 		60
C 207.8
(2.8)
P 		212.7
(3)
P 		116.6
(-1.5)
P 		163.1
(0.7)
P 		159.5
(0.5)
P 		85.7
(-3)
P 		127
avr 164
(-0.2) 		211.3
(3) 		123.1
(-3) 		136.5
(-2.1) 		148.4
(-1.3) 		138.9
(-1.9) 		88
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 48.9
(0)
P 		36.2
(-3)
P 		61.3
(3)
P 		53.5
(1.1)
P 		25
B 48.6
(-3)
P 		50.6
(-1.8)
A 		48.9
(-2.8)
A 		58.6
(3)
P 		10
C 49.3
(-1.7)
P 		72
(0.6)
P 		96.6
(3)
P 		35.6
(-3)
P 		61
avr 48.9
(-3) 		52.9
(-1.8) 		68.9
(3) 		49.2
(-2.9) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 31
(-2.8)
A 		87.2
(3)
P 		29.5
(-3)
P 		30.8
(-2.9)
M 		42.4
(-1.7)
A 		46.3
(-1.3)
A 		58
B 40.4
(-0.7)
P 		58.6
(2.9)
P 		28.5
(-3)
A 		33.1
(-2.1)
P 		58.9
(3)
P 		52.5
(1.7)
P 		30
C 77
(3)
P 		64.9
(1.5)
P 		29.7
(-2.9)
P 		32.8
(-2.5)
P 		51.6
(-0.2)
P 		28.7
(-3)
P 		48
avr 49.5
(-0) 		70.2
(3) 		29.2
(-3) 		32.2
(-2.6) 		51
(0.2) 		42.5
(-1.1) 		41
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188367_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16843
Sequence Type Exemplar sequence
Representative Public ID D2021.8 NCBI
Target Description D2021.8 /REP_DB=WormBase Gene ID /WP=CE02585 /TR=Q18970 /GB=AAB36862.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=ankyrin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077047(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077047 NCBI Caenorhabditis elegans D2021.8 (ankyrin) mRNA, complete cds. 11/11 None
SNAP00000016414 ENSEMBL cdna:SNAP chromosome:CEL140:X:8552215:8555259:1 11/11 None
GENEFINDER00000016416 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8552215:8555833:1 11/11 None
D2021.8 ENSEMBL cdna:known chromosome:CEL140:X:8552199:8553239:1 gene:D2021.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8552213-8553238(+) 100.0 100.0
Public Domain and Genome References
Gene Title ankyrin
Ensembl D2021.8
Entrez Gene 3565132 Entrez gene
SwissProt Q18970 EMBL-EBI
WormBase CE02585 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAP68947 Hypothetical protein D2021.2a [Caenorhabditis elegans] ref|NP_001024514.1| D2021.2a [Caenorhabditis elegans] 1.0E-179
blast AAP68947 Hypothetical protein D2021.2a [Caenorhabditis elegans] ref|NP_001024514.1| D2021.2a [Caenorhabditis elegans] 1.0E-143
blast T15889 hypothetical protein D2021.2 - Caenorhabditis elegans 1.0E-142
blast CAE74918 Hypothetical protein CBG22799 [Caenorhabditis briggsae] 1.0E-124
blast AAB36862 Hypothetical protein D2021.8 [Caenorhabditis elegans] ref|NP_509448.1| D2021.8 [Caenorhabditis elegans] 1.0E-116
blast AAB36862 Hypothetical protein D2021.8 [Caenorhabditis elegans] ref|NP_509448.1| D2021.8 [Caenorhabditis elegans] 1.0E-115
blast T15889 hypothetical protein D2021.2 - Caenorhabditis elegans 1.0E-106
blast CAE74917 Hypothetical protein CBG22798 [Caenorhabditis briggsae] 1.0E-102
Protein Domains
Database ID Description E-Value
Pfam IPR002110 EMBL-EBI Ankyrin 0.62
Pfam IPR002110 EMBL-EBI Ankyrin 1.1E-7
Pfam IPR002110 EMBL-EBI Ankyrin 0.0015
Pfam IPR002110 EMBL-EBI Ankyrin 0.0068
Pfam IPR002110 EMBL-EBI Ankyrin 1.3
Pfam IPR002110 EMBL-EBI Ankyrin 0.11
Pfam IPR002110 EMBL-EBI Ankyrin 2.4E-8
Pfam IPR001594 EMBL-EBI Zn-finger, DHHC type 2.2E-22
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000016414 6 263-285,290-312,321-343,348-370,446-468,483-505
GENEFINDER00000016416 6 263-285,290-312,321-343,348-370,446-468,483-505
Sequence
Target Sequence 
>C. ELEGANS:188367_AT
ggaagtgctgacgcacaaccttctgaagccagctgtagtcgtcgatagcttcaacttgca
cgcagtgatcagtgcaacacaacacggacatgtggaaagcgtcgaagcggcgttgaaaca
aggattatcaccaaataccacagatgatgacgggtgttcacttcttcattgggctgctat
caacaatagacttgaagttgcacgattactgatctcatacaacgcagatgcgaaccttat
tggtggcgtcttggcttcatctccaattcactgggcggctaggaatggactcgttgccat
gtgcgcggtgctggttaagggaggagctgtttgcaatgtgcgcgacattcagggatacac
gccaatccatttggcgatacagggaaatcatgtaccgttggtcgcttactttttgctcaa
atttgaatatgccaaggatattagtgataatagtggaatgacgccggcaatgatgtgcgc
aaaacgaagttttaccatgtttccactcagattaattgtgagggcaggagccgacttatc
tc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAAGTGCTGACGCACAACCTTCTG 654 529 27 Antisense
TGAAGCCAGCTGTAGTCGTCGATAG 78 575 50 Antisense
GATAGCTTCAACTTGCACGCAGTGA 499 423 70 Antisense
GATGACGGGTGTTCACTTCTTCATT 89 413 172 Antisense
CTTATTGGTGGCGTCTTGGCTTCAT 81 221 262 Antisense
TCTCCAATTCACTGGGCGGCTAGGA 667 607 286 Antisense
GGAATGGACTCGTTGCCATGTGCGC 368 531 308 Antisense
GGAGCTGTTTGCAATGTGCGCGACA 197 521 349 Antisense
TACCGTTGGTCGCTTACTTTTTGCT 529 647 419 Antisense
GAAGTTTTACCATGTTTCCACTCAG 529 335 512 Antisense
GTGAGGGCAGGAGCCGACTTATCTC 300 457 544 Antisense
Sequence Source Affymetrix Proprietary Database