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[188363_s_at] keratin

Description T08A9.1 /REP_DB=WormBase Gene ID /WP=CE04916 /TR=Q22342 /GB=AAA81420.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=keratin
Cluster 6grp_highest_10_10 > 82      6grp_high1_10_10 > 38      4grp_highest_8_8 > 53      4grp_high_8_8 > 09      6grp_highest_nonorm > 73      6grp_total > 18      4grp_total > 23      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 264
1 2 3 4 range
A 581.6
(3)
P 		483.4
(-0.9)
P 		431.3
(-3)
P 		556.2
(2)
P 		150
B 448.3
(3)
P 		376.9
(-0.3)
P 		317.3
(-3)
P 		443.7
(2.8)
P 		131
C 525
(3)
P 		413.1
(-3)
P 		493.2
(1.3)
P 		477.8
(0.5)
P 		112
avr 518.3
(3) 		424.5
(-2.4) 		413.9
(-3) 		492.6
(1.5) 		104

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 353
1 2 3 4 5 6 range
A 726.1
(3)
P 		497
(-1.1)
P 		387.3
(-3)
P 		481.4
(-1.3)
P 		480.7
(-1.3)
P 		552.4
(-0.1)
P 		339
B 693.7
(3)
P 		471
(-2.2)
P 		582.1
(0.4)
P 		543.2
(-0.5)
P 		435.3
(-3)
P 		534.8
(-0.7)
P 		258
C 566.6
(2)
P 		539.2
(1.3)
P 		372.9
(-3)
P 		607.4
(3)
P 		454.2
(-0.9)
P 		508.8
(0.5)
P 		235
avr 662.1
(3) 		502.4
(-1.5) 		447.4
(-3) 		544
(-0.3) 		456.7
(-2.7) 		532
(-0.6) 		215
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 138
1 2 3 4 range
A 211.8
(3)
P 		104.9
(-1.9)
P 		112.7
(-1.6)
P 		81.4
(-3)
P 		130
B 143
(3)
P 		93.1
(-1.3)
P 		73.5
(-3)
P 		94.6
(-1.2)
P 		70
C 173.8
(3)
P 		118.8
(-0.5)
P 		171.9
(2.9)
P 		80.6
(-3)
P 		93
avr 176.2
(3) 		105.6
(-1.7) 		119.4
(-0.8) 		85.5
(-3) 		91

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 157
1 2 3 4 5 6 range
A 133.9
(0.2)
P 		176.7
(3)
P 		84.4
(-3)
P 		122.1
(-0.5)
P 		145.1
(0.9)
P 		134.5
(0.3)
P 		92
B 241.4
(3)
P 		156.8
(-2.1)
P 		141.3
(-3)
P 		143.9
(-2.8)
P 		176.9
(-0.9)
P 		199.4
(0.5)
P 		100
C 210
(3)
P 		164.5
(0.6)
P 		94.9
(-3)
P 		122.2
(-1.6)
P 		147
(-0.3)
P 		170.3
(0.9)
P 		115
avr 195.1
(3) 		166
(1) 		106.9
(-3) 		129.4
(-1.5) 		156.3
(0.4) 		168.1
(1.2) 		88
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188363_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16081
Sequence Type Exemplar sequence
Representative Public ID T08A9.1 NCBI
Target Description T08A9.1 /REP_DB=WormBase Gene ID /WP=CE04916 /TR=Q22342 /GB=AAA81420.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=keratin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076840(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076840 NCBI Caenorhabditis elegans T08A9.1 (keratin) mRNA, complete cds. 11/11 None
T08A9.1 ENSEMBL cdna:known chromosome:CEL140:X:7334748:7340129:1 gene:T08A9.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7334746-7339793(+) 100.0 100.0
Public Domain and Genome References
Gene Title keratin
Ensembl T08A9.1
Entrez Gene 180996 Entrez gene
SwissProt Q22342 EMBL-EBI
WormBase CE04916 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_509241 T08A9.1 [Caenorhabditis elegans] gb|AAA81420.1| Hypothetical protein T08A9.1 [Caenorhabditis elegans] 0.0
blast CAE65876 Hypothetical protein CBG11026 [Caenorhabditis briggsae] 0.0
blast XP_391908 PREDICTED: similar to LD09358p [Apis mellifera] 2.0E-37
Sequence
Target Sequence 
>C. ELEGANS:188363_S_AT
gagtctccgatccggtggaacgtacgcaatcgaagattctccaaagatcagagaatgtgc
ttccaaatataaatcaatggctctcaaagtttccacctaccaaggaatggaggaaagttt
ctatcaaccaatggcagccagcaccatccaggttgctacttctccatccgaactggaagt
ggaaagaagcagccaaaacactatctgtacacaaacacgcctatgcctccccgccatgaa
tcttttggtgtcagttcaagatatcaaaattggttgtgcggttattgttatctggcacca
ggcacataacgcttatgtcattttttgctcaagcccgaatcgttacttcgtgaaagaatc
gtcgattcgtcgtttgggaatcaacacacagaacgcagccactcgccgcaactggataat
tgcgcgagttgttcgttctgacagttgctctatcaagaagccagttaaccggtacaactt
gccaattggcactatcgtccgtcgcgttgaggtggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTCTCCGATCCGGTGGAACGTAC 669 347 3438 Antisense
ATCTGTACACAAACACGCCTATGCC 41 33 3640 Antisense
CTCCCCGCCATGAATCTTTTGGTGT 134 235 3664 Antisense
TATCTGGCACCAGGCACATAACGCT 14 657 3726 Antisense
TCAAGCCCGAATCGTTACTTCGTGA 34 633 3766 Antisense
GAATCGTCGATTCGTCGTTTGGGAA 417 327 3793 Antisense
GAATCAACACACAGAACGCAGCCAC 403 327 3815 Antisense
AATTGCGCGAGTTGTTCGTTCTGAC 665 177 3855 Antisense
TCGTTCTGACAGTTGCTCTATCAAG 72 605 3870 Antisense
AACCGGTACAACTTGCCAATTGGCA 536 133 3904 Antisense
TATCGTCCGTCGCGTTGAGGTGGAA 671 625 3930 Antisense
Sequence Source Affymetrix Proprietary Database