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[188360_at]

Description F55H2.6 /REP_DB=WormBase Gene ID /WP=CE00213 /GEN=clu-1 /TR=SW:P34466 /GB=CAA80143.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 51      6grp_high1_10_10 > 16      4grp_highest_8_8 > 41      4grp_high_8_8 > 49      6grp_highest_nonorm > 20      6grp_total > 15      4grp_total > 62      6grp_highest_sub > De      6grp_cgc > 23      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1343
1 2 3 4 range
A 1611.6
(3)
P 		845.3
(-0.8)
P 		1129.7
(0.6)
P 		398
(-3)
P 		1214
B 1730.3
(3)
P 		1050.1
(-0.2)
P 		1111.8
(0.1)
P 		443.3
(-3)
P 		1287
C 1404.1
(3)
P 		1085.6
(1.1)
P 		1299
(2.4)
P 		387.6
(-3)
P 		1017
avr 1582
(3) 		993.7
(-0) 		1180.2
(0.9) 		409.6
(-3) 		1172

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1243
1 2 3 4 5 6 range
A 1569
(3)
P 		1433
(2.1)
P 		820.5
(-2.2)
P 		980.8
(-1.1)
P 		707.4
(-3)
P 		840.8
(-2.1)
P 		862
B 1429.1
(3)
P 		1363.9
(2.5)
P 		855.2
(-1.1)
P 		1017.3
(0.1)
P 		591.3
(-3)
P 		754.2
(-1.8)
P 		838
C 1833.9
(3)
P 		1309.7
(-0.1)
P 		1390.8
(0.4)
P 		1000.7
(-1.8)
P 		803.1
(-3)
P 		809.2
(-3)
P 		1031
avr 1610.7
(3) 		1368.9
(1.4) 		1022.2
(-0.9) 		999.6
(-1) 		700.6
(-3) 		801.4
(-2.3) 		910
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 529
1 2 3 4 range
A 586.8
(3)
P 		183.5
(-1.6)
P 		295.3
(-0.3)
P 		58.3
(-3)
P 		529
B 551.8
(3)
P 		259.4
(-0.8)
P 		257.6
(-0.9)
P 		94.5
(-3)
P 		457
C 464.8
(3)
P 		312.1
(0.7)
P 		452.7
(2.8)
P 		65.4
(-3)
P 		399
avr 534.5
(3) 		251.7
(-0.7) 		335.2
(0.4) 		72.7
(-3) 		462

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 501
1 2 3 4 5 6 range
A 289.2
(-1)
P 		509.7
(3)
P 		178.7
(-3)
P 		248.8
(-1.7)
P 		213.5
(-2.4)
P 		204.7
(-2.5)
P 		331
B 497.3
(3)
P 		454
(2.1)
P 		207.7
(-3)
P 		269.4
(-1.7)
P 		240.2
(-2.3)
P 		281.2
(-1.5)
P 		290
C 679.8
(3)
P 		399.6
(-0.5)
P 		354
(-1.1)
P 		201.2
(-3)
P 		259.9
(-2.3)
P 		270.9
(-2.1)
P 		479
avr 488.8
(3) 		454.4
(2.2) 		246.8
(-2.8) 		239.8
(-3) 		237.9
(-3) 		252.3
(-2.7) 		251
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188360_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8096
Sequence Type Exemplar sequence
Representative Public ID F55H2.6 NCBI
Target Description F55H2.6 /REP_DB=WormBase Gene ID /WP=CE00213 /GEN=clu-1 /TR=SW:P34466 /GB=CAA80143.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066696(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066696 NCBI Caenorhabditis elegans yeast CLU (mitochondrial clustering) related family member (clu-1) (clu-1) mRNA, complete cds. 11/11 A 
F55H2.6.1 ENSEMBL cdna:known chromosome:CEL140:III:9516224:9521356:-1 gene:F55H2.6 11/11 None
F55H2.6.2 ENSEMBL cdna:known chromosome:CEL140:III:9516224:9521358:-1 gene:F55H2.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9517183-9521352(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol clu-1
Ensembl F55H2.6
Entrez Gene 176341 Entrez gene
SwissProt P34466 EMBL-EBI
WormBase CE00213 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:18583_AT tetratricopeptide repeat (TPR)-containing protein at
ATH1-121501:252031_AT tetratricopeptide repeat (TPR)-containing protein at
CANINE_2:CFAAFFX.29484.1.S1_AT similar to Putative eukaryotic translation initiation factor 3 subunit (eIF-3) cfa
CANINE_2:CFAAFFX.29487.1.S1_AT similar to Putative eukaryotic translation initiation factor 3 subunit (eIF-3) cfa
DROSOPHILA_2:1627927_AT dm
DROSGENOME1:151655_AT dm
DROSGENOME1:142634_AT dm
CHICKEN:GGA.15957.1.S1_S_AT similar to KIAA0664 protein gga
CHICKEN:GGAAFFX.26629.2.S1_AT similar to KIAA0664 protein gga
CHICKEN:GGAAFFX.26629.3.S1_S_AT similar to KIAA0664 protein gga
MG-U74BV2:107290_AT RIKEN cDNA 1300001I01 gene mm
MG-U74BV2:162889_AT RIKEN cDNA 1300001I01 gene mm
MOE430A:1428106_AT RIKEN cDNA 1300001I01 gene mm
MOUSE430A_2:1428106_AT RIKEN cDNA 1300001I01 gene mm
MOUSE430_2:1428106_AT RIKEN cDNA 1300001I01 gene mm
MG-U74CV2:141129_AT RIKEN cDNA 1300001I01 gene mm
MU19KSUBB:TC26825_AT RIKEN cDNA 1300001I01 gene mm
MU19KSUBB:TC26232_AT RIKEN cDNA 1300001I01 gene, mRNA (cDNA clone IMAGE:5100665) mm
MU19KSUBC:TC40091_AT RIKEN cDNA 1300001I01 gene, mRNA (cDNA clone IMAGE:5100665) mm
MU19KSUBC:TC40091_G_AT RIKEN cDNA 1300001I01 gene, mRNA (cDNA clone IMAGE:5100665) mm
RAE230A:1398902_AT Similar to mKIAA0664 protein (predicted) rn
RAT230_2:1398902_AT Similar to mKIAA0664 protein (predicted) rn
RG-U34A:RC_AA892789_AT Similar to mKIAA0664 protein (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAA81605 Hypothetical protein F55H2.6 [Caenorhabditis elegans] emb|CAA80143.1| Hypothetical protein F55H2.6 [Caenorhabditis elegans] ref|NP_499097.1| yeast CLU (mitochondrial clustering) related family member (clu-1) [Caenorhabditis elegans] sp|P34466|IF3X_CAEEL Putative eukaryotic translation initiation factor 3 subunit (eIF-3) 0.0
blast AAC72406 CLU-1 [Caenorhabditis elegans] 0.0
blast CAE65192 Hypothetical protein CBG10067 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:188360_AT
tcttcgtccattgtaccgtgcgagatatctcatgaatctcgtatttggagagaaacatcc
tgtaatggctcaaattgatgccaacattggactcattttgttcactgttcaagagttcga
cacagctttgaagtacttgcaatcggctgatgctatcacaaaaactattggagaaccgag
aaagctgaagactggattgatttccaatttgattgcccgaacacatgcggctcgtggaga
tttccgagctgctctagttgctgaaaaggaaacattcgctatttattccgaactctatgg
accaaatcacccaagagtcaacgaatcgagtgaatatcttcgcacgcttactcaacaagc
tgttacattccaaaagaaaatgttgaaacttgacaatagtacaaacattactgaattgtt
ccaggctcaacctccaacagttacctctctatttgataccttaaacatcatcaacggaat
actgatcattggtgttcctggattgtcttctct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTCGTCCATTGTACCGTGCGAGA 426 615 3162 Antisense
TTGGACTCATTTTGTTCACTGTTCA 260 709 3248 Antisense
GTACTTGCAATCGGCTGATGCTATC 691 459 3294 Antisense
TTGATTGCCCGAACACATGCGGCTC 527 703 3370 Antisense
ACATGCGGCTCGTGGAGATTTCCGA 631 105 3384 Antisense
TTCCGAGCTGCTCTAGTTGCTGAAA 340 699 3403 Antisense
GAACTCTATGGACCAAATCACCCAA 627 347 3451 Antisense
AGTGAATATCTTCGCACGCTTACTC 133 61 3490 Antisense
TACTGAATTGTTCCAGGCTCAACCT 501 641 3570 Antisense
CAGTTACCTCTCTATTTGATACCTT 218 207 3599 Antisense
TTGGTGTTCCTGGATTGTCTTCTCT 367 707 3650 Antisense
Sequence Source Affymetrix Proprietary Database