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[188359_at] esterase

Description R173.3 /REP_DB=WormBase Gene ID /WP=CE04846 /TR=Q22008 /GB=AAA80438.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=esterase
Cluster 6grp_total > 04      4grp_total > 54      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 98
1 2 3 4 range
A 109.7
(3)
P 		99.9
(1.8)
P 		62.4
(-3)
A 		63.7
(-2.8)
A 		47
B 136
(3)
P 		67.1
(-1.2)
A 		84.7
(-0.1)
A 		37.9
(-3)
A 		98
C 110.3
(3)
P 		87
(0.8)
M 		59.7
(-1.8)
P 		47.7
(-3)
A 		63
avr 118.7
(3) 		84.7
(0) 		68.9
(-1.3) 		49.8
(-3) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 131
1 2 3 4 5 6 range
A 102.7
(3)
P 		88.2
(1.9)
P 		60.9
(-0.1)
P 		66.1
(0.3)
A 		52
(-0.7)
P 		21.4
(-3)
A 		81
B 104.2
(3)
P 		93
(2.3)
P 		75.3
(1.2)
P 		55.2
(-0)
A 		52.6
(-0.2)
P 		6.4
(-3)
A 		98
C 137.2
(3)
P 		88.1
(0.5)
P 		49.3
(-1.4)
A 		83.2
(0.3)
P 		31.6
(-2.3)
A 		17.7
(-3)
A 		120
avr 114.7
(3) 		89.8
(1.5) 		61.8
(-0.2) 		68.2
(0.2) 		45.4
(-1.2) 		15.2
(-3) 		100
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 40
(3)
P 		21.7
(-0.6)
P 		16.3
(-1.6)
A 		9.3
(-3)
A 		31
B 43.4
(3)
P 		16.6
(-1.6)
A 		19.6
(-1)
A 		8.1
(-3)
A 		35
C 36.5
(3)
P 		25
(0.6)
M 		20.8
(-0.3)
P 		8
(-3)
A 		29
avr 40
(3) 		21.1
(-0.6) 		18.9
(-1) 		8.5
(-3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 18.9
(0.1)
P 		31.4
(3)
P 		13.3
(-1.1)
P 		16.8
(-0.3)
A 		15.7
(-0.6)
P 		5.2
(-3)
A 		26
B 36.3
(3)
P 		31
(2.1)
P 		18.3
(-0.2)
P 		14.6
(-0.8)
A 		21.4
(0.4)
P 		2.4
(-3)
A 		34
C 50.8
(3)
P 		26.9
(-0.2)
P 		12.6
(-2.1)
A 		16.7
(-1.6)
P 		10.2
(-2.4)
A 		5.9
(-3)
A 		45
avr 35.3
(3) 		29.8
(1.9) 		14.7
(-1) 		16
(-0.8) 		15.8
(-0.8) 		4.5
(-3) 		31
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188359_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16490
Sequence Type Exemplar sequence
Representative Public ID R173.3 NCBI
Target Description R173.3 /REP_DB=WormBase Gene ID /WP=CE04846 /TR=Q22008 /GB=AAA80438.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=esterase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076786(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076786 NCBI Caenorhabditis elegans R173.3 (esterase) mRNA, complete cds. 11/11 None
R173.3 ENSEMBL cdna:known chromosome:CEL140:X:7030173:7036035:-1 gene:R173.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7031549-7035984(-) 100.0 100.0
Public Domain and Genome References
Gene Title esterase
Ensembl R173.3
Entrez Gene 180973 Entrez gene
SwissProt Q22008 EMBL-EBI
WormBase CE37664 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1641098_AT dm
DROSGENOME1:146096_AT dm
MOUSE430_2:1457619_AT cDNA sequence BC015286 mm
MOE430B:1457619_AT cDNA sequence BC015286 mm
Protein Similarities
Method ID Description E-Value
blast AAA80438 Hypothetical protein R173.3 [Caenorhabditis elegans] ref|NP_509187.3| R173.3 [Caenorhabditis elegans] 0.0
blast CAE65833 Hypothetical protein CBG10957 [Caenorhabditis briggsae] 0.0
blast XP_848357 PREDICTED: similar to X-linked neuroligin 4 isoform 1 [Canis familiaris] 4.0E-52
Protein Domains
Database ID Description E-Value
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 3.3E-116
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509187.3 1 548-570
R173.3 1 548-570
Sequence
Target Sequence 
>C. ELEGANS:188359_AT
ttggtggaatactgccagaacccccggaacaactgacactccacagaagaaaaactccaa
tcgtaattggaacaacaaaagatgagagctcacttaggatattacttctaaatgaaaaag
acctaaacttctcttcaataacatgggaaaatggagaaacattagcagacaatctcacgt
taggttttaagcaatttcaaaaccatcgcctgatttcccaaggttgtaaatcagaatacg
tatggacccaagtggatccatcattccctgaatcagtattatttaattcactattaaaaa
tgtattcgcacttctggtacgacgccccagcatctcaattagccacttactacctcaaac
acgatttaccggtttatctgtattctttcgatcacattagtgaaaatttttatgatattg
atagagcttttcacggcgttgaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGGTGGAATACTGCCAGAACCCCC 409 689 716 Antisense
CCGGAACAACTGACACTCCACAGAA 310 265 739 Antisense
GACCTAAACTTCTCTTCAATAACAT 358 381 835 Antisense
AGCAGACAATCTCACGTTAGGTTTT 672 75 879 Antisense
CATCGCCTGATTTCCCAAGGTTGTA 690 211 919 Antisense
GGACCCAAGTGGATCCATCATTCCC 343 523 959 Antisense
TGTATTCGCACTTCTGGTACGACGC 102 557 1016 Antisense
CCAGCATCTCAATTAGCCACTTACT 414 271 1042 Antisense
CCACTTACTACCTCAAACACGATTT 414 235 1058 Antisense
GGTTTATCTGTATTCTTTCGATCAC 69 507 1086 Antisense
GATAGAGCTTTTCACGGCGTTGACA 405 419 1135 Antisense
Sequence Source Affymetrix Proprietary Database