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[188357_at]

Description Y77E11A.4 /REP_DB=WormBase Gene ID /WP=CE25618 /GEN=jtr-1 /TR=Q9N4B5 /GB=AAF36074.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 99      6grp_high1_10_10 > 92      4grp_highest_8_8 > 22      4grp_high_8_8 > 06      6grp_highest_nonorm > 63      6grp_total > 94      4grp_total > 02      6grp_cgc > 88      6grp_high1_sub > 04_05      6grp_total_sub > Hat      6grp_rule_based > S5      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 534
1 2 3 4 range
A 481
(-3)
P 		539.9
(-2.3)
P 		510.4
(-2.7)
P 		1009.1
(3)
P 		528
B 519.3
(-3)
P 		541.8
(-2.7)
P 		552.1
(-2.5)
P 		922.4
(3)
P 		403
C 547.3
(-2.2)
P 		475.4
(-3)
P 		522
(-2.5)
P 		985.2
(3)
P 		510
avr 515.9
(-3) 		519
(-3) 		528.2
(-2.8) 		972.2
(3) 		456

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 840
1 2 3 4 5 6 range
A 407.3
(-2.7)
P 		385.5
(-3)
P 		591.4
(-0.4)
P 		653.7
(0.4)
P 		857.8
(3)
P 		572.4
(-0.6)
P 		472
B 557.8
(-2.2)
P 		460.1
(-3)
P 		594.8
(-1.9)
P 		619.5
(-1.7)
P 		1225.2
(3)
P 		668
(-1.4)
P 		765
C 488.8
(-1.7)
P 		417.2
(-3)
P 		520.8
(-1.1)
P 		655.1
(1.4)
P 		696.8
(2.2)
P 		740
(3)
P 		323
avr 484.6
(-2.2) 		420.9
(-3) 		569
(-1.2) 		642.8
(-0.4) 		926.6
(3) 		660.1
(-0.2) 		506
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 175.1
(3)
P 		117.2
(-3)
P 		133.4
(-1.3)
P 		147.7
(0.2)
P 		58
B 165.6
(0.3)
P 		133.8
(-2.5)
P 		127.9
(-3)
P 		196.6
(3)
P 		69
C 181.2
(2.9)
P 		136.7
(-3)
P 		181.9
(3)
P 		166.1
(0.9)
P 		45
avr 174
(3) 		129.2
(-3) 		147.7
(-0.5) 		170.1
(2.5) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 423
1 2 3 4 5 6 range
A 75.1
(-3)
P 		137.1
(-1)
P 		128.8
(-1.2)
P 		165.8
(-0)
P 		258.8
(3)
P 		139.4
(-0.9)
P 		184
B 194.1
(-2.2)
P 		153.1
(-2.9)
P 		144.4
(-3)
P 		164.1
(-2.7)
P 		497.8
(3)
P 		249.1
(-1.2)
P 		353
C 181.2
(-0.3)
P 		127.3
(-3)
P 		132.5
(-2.7)
P 		131.7
(-2.8)
P 		225.5
(1.9)
P 		247.7
(3)
P 		120
avr 150.1
(-2.5) 		139.2
(-2.9) 		135.2
(-3) 		153.9
(-2.4) 		327.4
(3) 		212.1
(-0.6) 		192
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188357_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11159
Sequence Type Exemplar sequence
Representative Public ID Y77E11A.4 NCBI
Target Description Y77E11A.4 /REP_DB=WormBase Gene ID /WP=CE25618 /GEN=jtr-1 /TR=Q9N4B5 /GB=AAF36074.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067677(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067677 NCBI Caenorhabditis elegans human JTB gene Related family member (jtr-1) (jtr-1) mRNA, complete cds. 11/11 None
SNAP00000027304 ENSEMBL cdna:SNAP chromosome:CEL140:IV:1420229:1422710:1 11/11 None
Y77E11A.4 ENSEMBL cdna:known chromosome:CEL140:IV:1420987:1421778:1 gene:Y77E11A.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000027333 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1420992-1421653(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol jtr-1
Ensembl Y77E11A.4
Entrez Gene 176952 Entrez gene
SwissProt Q9N4B5 EMBL-EBI
WormBase CE25618 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF36074 Human jtb gene related protein 1 [Caenorhabditis elegans] ref|NP_500078.3| human JTB gene Related family member (jtr-1) [Caenorhabditis elegans] 6.0E-84
blast AAF36074 Human jtb gene related protein 1 [Caenorhabditis elegans] ref|NP_500078.3| human JTB gene Related family member (jtr-1) [Caenorhabditis elegans] 1.0E-77
blast BAA34305.1 cJTB-like [Caenorhabditis elegans] 2.0E-70
blast BAA34305.1 cJTB-like [Caenorhabditis elegans] 3.0E-64
blast CAE68268 Hypothetical protein CBG13945 [Caenorhabditis briggsae] 4.0E-63
blast CAE68268 Hypothetical protein CBG13945 [Caenorhabditis briggsae] 2.0E-57
Protein Domains
Database ID Description E-Value
Pfam IPR008657 EMBL-EBI Jumping translocation breakpoint 3.4E-82
Pfam IPR008657 EMBL-EBI Jumping translocation breakpoint 3.3E-73
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500078.3 2 9-26,130-147
Y77E11A.4 2 9-26,130-147
SNAP00000027304 2 30-47,151-168
Sequence
Target Sequence 
>C. ELEGANS:188357_AT
aagcaaatttccacgtttgtcctcgccctaatcggtttttcgattctcgtattcttcatc
gaagagtacacggaggaaagtgagatgaacagcgaaatggagatgaaaaaagcgttttat
aagacggaacacggcggaaccaccggaaaactggaaaaagtggtgacggaatatccagcg
gaagaatgttggaagcatgagccatttgaagtggtcacccagtgtgcaccgtgcaaggat
ttcgagattaaggctattaaagctggtcattgcctaaaaaccggctatttcgatcgtgta
aactgctccaaatcgtcgacaactgtgctccgcccgtgtccatctccaaaacaatcccgc
cgccacgagttttacctgttctacgtggtaaatgccgcaattctcatcgtgagcttcttg
tcgacgacacagcggaaggctcaactcgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGCAAATTTCCACGTTTGTCCTCG 13 137 31 Antisense
GGTTTTTCGATTCTCGTATTCTTCA 197 503 64 Antisense
TTGAAGTGGTCACCCAGTGTGCACC 391 703 236 Antisense
GTGCACCGTGCAAGGATTTCGAGAT 347 481 254 Antisense
GCTGGTCATTGCCTAAAAACCGGCT 296 293 292 Antisense
ACCGGCTATTTCGATCGTGTAAACT 681 81 310 Antisense
TAAACTGCTCCAAATCGTCGACAAC 373 641 329 Antisense
GCCACGAGTTTTACCTGTTCTACGT 568 279 392 Antisense
AATGCCGCAATTCTCATCGTGAGCT 411 167 421 Antisense
ATCGTGAGCTTCTTGTCGACGACAC 69 35 436 Antisense
GACACAGCGGAAGGCTCAACTCGAA 328 365 456 Antisense
Sequence Source Affymetrix Proprietary Database