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[188355_s_at] esterase

Description F27C8.6 /REP_DB=WormBase Gene ID /WP=CE03271 /TR=Q19839 /GB=CAA92464.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=esterase
Cluster 6grp_total > 87      4grp_total > 09      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 374
1 2 3 4 range
A 39.8
(-3)
A 		58.8
(-2.6)
A 		84.1
(-2)
A 		303.5
(3)
P 		264
B 26.8
(-3)
A 		104.5
(-1.8)
A 		67.6
(-2.3)
A 		401
(3)
P 		374
C 62.8
(-3)
A 		63.2
(-2.9)
A 		60.4
(-3)
A 		349.5
(3)
P 		289
avr 43.1
(-3) 		75.5
(-2.4) 		70.7
(-2.5) 		351.3
(3) 		308

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3811
1 2 3 4 5 6 range
A 78.1
(-2.9)
A 		12.3
(-3)
A 		159.3
(-2.8)
P 		461.4
(-2.3)
P 		1679.9
(-0.4)
P 		3822.4
(3)
P 		3810
B 49
(-2.9)
A 		11.8
(-3)
A 		115.2
(-2.8)
P 		454.7
(-2.2)
P 		1611.3
(-0.1)
P 		3288.6
(3)
P 		3277
C 16.6
(-3)
A 		64.9
(-2.9)
A 		151.5
(-2.7)
P 		512.1
(-1.9)
P 		1687.8
(0.6)
P 		2787.6
(3)
P 		2771
avr 47.9
(-3) 		29.7
(-3) 		142
(-2.8) 		476.1
(-2.2) 		1659.7
(-0) 		3299.5
(3) 		3270
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 14.5
(-2.7)
A 		12.8
(-3)
A 		22
(-1.3)
A 		44.4
(3)
P 		32
B 8.5
(-3)
A 		25.8
(-1.7)
A 		15.7
(-2.4)
A 		85.5
(3)
P 		77
C 20.8
(-2.6)
A 		18.2
(-3)
A 		21.1
(-2.6)
A 		58.9
(3)
P 		41
avr 14.6
(-3) 		18.9
(-2.5) 		19.6
(-2.4) 		62.9
(3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1222
1 2 3 4 5 6 range
A 14.4
(-2.9)
A 		4.4
(-3)
A 		34.7
(-2.8)
P 		117
(-2.3)
P 		506.9
(0.3)
P 		930.6
(3)
P 		926
B 17.1
(-2.9)
A 		3.9
(-3)
A 		28
(-2.9)
P 		120.4
(-2.4)
P 		654.6
(0.2)
P 		1226.3
(3)
P 		1222
C 6.1
(-3)
A 		19.8
(-2.9)
A 		38.6
(-2.8)
P 		103
(-2.4)
P 		546.1
(0.5)
P 		933.2
(3)
P 		927
avr 12.5
(-3) 		9.4
(-3) 		33.8
(-2.9) 		113.5
(-2.4) 		569.2
(0.3) 		1030
(3) 		1021
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188355_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9899
Sequence Type Exemplar sequence
Representative Public ID F27C8.6 NCBI
Target Description F27C8.6 /REP_DB=WormBase Gene ID /WP=CE03271 /TR=Q19839 /GB=CAA92464.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=esterase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069301(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069301 NCBI Caenorhabditis elegans F27C8.6 (esterase) mRNA, complete cds. 11/11 None
SNAP00000022606 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9587246:9588754:-1 11/11 None
GENEFINDER00000022613 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9587246:9588751:-1 11/11 None
F27C8.6.1 ENSEMBL cdna:known chromosome:CEL140:IV:9587082:9588811:-1 gene:F27C8.6 11/11 None
F27C8.6.2 ENSEMBL cdna:known chromosome:CEL140:IV:9587092:9588801:-1 gene:F27C8.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9587251-9588757(-) 100.0 100.0
Public Domain and Genome References
Gene Title esterase
Ensembl F27C8.6
Entrez Gene 177791 Entrez gene
SwissProt Q19839 EMBL-EBI
WormBase CE03271 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CHICKEN:GGA.19682.1.S1_AT similar to arylacetamide deacetylase gga
CHICKEN:GGAAFFX.2556.1.S1_S_AT similar to arylacetamide deacetylase gga
CHICKEN:GGAAFFX.2556.2.S1_S_AT similar to arylacetamide deacetylase gga
CHICKEN:GGAAFFX.2556.3.S1_AT similar to arylacetamide deacetylase gga
CHICKEN:GGAAFFX.26114.1.S1_AT similar to arylacetamide deacetylase gga
CHICKEN:GGAAFFX.2616.1.S1_AT similar to arylacetamide deacetylase gga
Protein Similarities
Method ID Description E-Value
blast CAA92464 Hypothetical protein F27C8.6 [Caenorhabditis elegans] ref|NP_501702.1| F27C8.6 [Caenorhabditis elegans] 0.0
blast CAE72784 Hypothetical protein CBG20044 [Caenorhabditis briggsae] 0.0
blast CAF31494 Hypothetical protein T09B9.1 [Caenorhabditis elegans] ref|NP_001024899.1| T09B9.1 [Caenorhabditis elegans] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501702.1 1 13-31
F27C8.6.1 1 13-31
F27C8.6.2 1 13-31
SNAP00000022606 1 13-32
GENEFINDER00000022613 1 13-31
Sequence
Target Sequence 
>C. ELEGANS:188355_S_AT
ttggctggacaagtgctcatctacccacttttgcaaatggctgacatgcaaacagtttca
taccgttacttccactctcgcctccgtggctatgctttagtcgatcctgagtcagttgct
tattattacatgttctatgctggaattgacatggatgaaaaagcatatcttgtacccagt
gttatttcaaacggccacgttgcaaatcacttacagtcagaagccagtgagattatgtcg
tataaaagcgtgatcgaaatgaaacacaactacaaaaatcacagcattacggaaagatgg
gaagttagccaaagctatgaagcccaagatttgatggaaccgtttctcacgaatccagat
ttctctccgctgatgagaaaagatttatccaatcttcctccaacaatggtgatcacttgc
gaatttgatattcttcgtgacgagggtcttatatatggagagcgactgaaggtttccggt
gtgcccaccactaccatccactacgaaaatggattccatgcaatgctcaactttcacagt
gaactcgacgaagcctccaaatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGGCTGGACAAGTGCTCATCTACC 480 707 688 Antisense
GCTATGCTTTAGTCGATCCTGAGTC 661 303 776 Antisense
AAAGCATATCTTGTACCCAGTGTTA 634 123 847 Antisense
GGCCACGTTGCAAATCACTTACAGT 69 545 880 Antisense
GAACCGTTTCTCACGAATCCAGATT 166 347 1024 Antisense
TCCAGATTTCTCTCCGCTGATGAGA 162 591 1041 Antisense
TATCCAATCTTCCTCCAACAATGGT 506 657 1073 Antisense
GAGCGACTGAAGGTTTCCGGTGTGC 90 387 1147 Antisense
ACCACTACCATCCACTACGAAAATG 704 83 1174 Antisense
GCAATGCTCAACTTTCACAGTGAAC 535 321 1207 Antisense
TGAACTCGACGAAGCCTCCAAATCA 5 575 1227 Antisense
Sequence Source Affymetrix Proprietary Database