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[188351_s_at] Cyclins

Description Y38F1A.5 /REP_DB=WormBase Gene ID /WP=CE21610 /TR=Q9U2M5 /GB=CAA21630.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Cyclins
Cluster 6grp_high1_10_10 > 36      4grp_high_8_8 > 36      6grp_total > 36      4grp_total > 51      6grp_cgc > 15      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 211
1 2 3 4 range
A 207.7
(-3)
P 		320
(3)
P 		279.7
(0.8)
P 		225.2
(-2.1)
A 		112
B 323.1
(1.5)
P 		343.5
(3)
P 		337.8
(2.6)
P 		261.9
(-3)
P 		82
C 305.5
(-0.8)
P 		418.3
(3)
P 		248.6
(-2.7)
P 		239.1
(-3)
P 		179
avr 278.8
(-1.1) 		360.6
(3) 		288.7
(-0.6) 		242.1
(-3) 		119

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 357
1 2 3 4 5 6 range
A 430.9
(3)
P 		310.7
(0.8)
P 		173.1
(-1.8)
P 		226.3
(-0.8)
P 		105.6
(-3)
A 		241.5
(-0.5)
P 		325
B 285.5
(3)
P 		225.5
(1.3)
P 		164.1
(-0.4)
P 		179.7
(-0)
P 		74.3
(-3)
P 		228.2
(1.4)
P 		211
C 265.4
(2.6)
P 		274.1
(3)
P 		218.4
(0.6)
P 		132.5
(-3)
P 		134.8
(-2.9)
P 		182.2
(-0.9)
P 		142
avr 327.3
(3) 		270.1
(1.5) 		185.2
(-0.8) 		179.5
(-1) 		104.9
(-3) 		217.3
(0) 		222
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 75.6
(3)
P 		69.5
(2.1)
P 		73.1
(2.6)
P 		33
(-3)
A 		43
B 103
(3)
P 		84.8
(0.7)
P 		78.3
(-0.1)
P 		55.8
(-3)
P 		47
C 101.1
(1.6)
P 		120.3
(3)
P 		86.6
(0.5)
P 		40.3
(-3)
P 		80
avr 93.2
(3) 		91.5
(2.8) 		79.3
(1.3) 		43
(-3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 84
1 2 3 4 5 6 range
A 79.4
(0.6)
P 		110.5
(3)
P 		37.7
(-2.6)
P 		57.4
(-1.1)
P 		31.9
(-3)
A 		58.8
(-0.9)
P 		79
B 99.3
(3)
P 		75.1
(0.9)
P 		39.9
(-2.2)
P 		47.6
(-1.5)
P 		30.2
(-3)
P 		85.1
(1.8)
P 		69
C 98.4
(3)
P 		83.6
(1.8)
P 		55.6
(-0.6)
P 		26.6
(-3)
P 		43.6
(-1.6)
P 		61
(-0.1)
P 		72
avr 92.4
(3) 		89.7
(2.7) 		44.4
(-2) 		43.9
(-2.1) 		35.2
(-3) 		68.3
(0.5) 		57
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188351_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3564
Sequence Type Exemplar sequence
Representative Public ID Y38F1A.5 NCBI
Target Description Y38F1A.5 /REP_DB=WormBase Gene ID /WP=CE21610 /TR=Q9U2M5 /GB=CAA21630.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Cyclins
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064362(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064362 NCBI Caenorhabditis elegans Y38F1A.5 (Cyclins) mRNA, complete cds. 11/11 A 
SNAP00000020281 ENSEMBL cdna:SNAP chromosome:CEL140:II:12991917:12992451:1 9/11 None
GENEFINDER00000020300 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12988120:12992451:1 11/11 None
Y38F1A.5.2 ENSEMBL cdna:known chromosome:CEL140:II:12980488:12993015:1 gene:Y38F1A.5 11/11 A 
Y38F1A.5.1 ENSEMBL cdna:known chromosome:CEL140:II:12988119:12993015:1 gene:Y38F1A.5 11/11 A 
Y38F1A.5.3 ENSEMBL cdna:known chromosome:CEL140:II:12988120:12993015:1 gene:Y38F1A.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000020280 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12988116-12992448(+) 96.88 100.0
Public Domain and Genome References
Gene Title Cyclins
Gene Symbol cyd-1
Ensembl Y38F1A.5
Entrez Gene 174941 Entrez gene
SwissProt Q9U2M5 EMBL-EBI
WormBase CE21610 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.21188.1.S1_S_AT similar to G1/S-specific cyclin D2 cfa
DROSOPHILA_2:1627295_S_AT Cyclin D dm
DROSGENOME1:154137_AT Cyclin D dm
CHICKEN:GGA.3974.1.S1_AT cyclin D2 gga
CHICKEN:GGA.3974.1.S2_AT cyclin D2 gga
HG-U133_PLUS_2:200951_S_AT cyclin D2 hs
HG-U133A_2:200951_S_AT cyclin D2 hs
HG-U133A:200951_S_AT cyclin D2 hs
HG-U133_PLUS_2:200952_S_AT cyclin D2 hs
HG-U133A_2:200952_S_AT cyclin D2 hs
HG-U133A:200952_S_AT cyclin D2 hs
HG-U95AV2:1983_AT cyclin D2 hs
HC-G110:1983_AT cyclin D2 hs
HG-U133A:200953_S_AT cyclin D2 hs
HG-U133_PLUS_2:200953_S_AT cyclin D2 hs
HG-FOCUS:200953_S_AT cyclin D2 hs
HG-U133A_2:200953_S_AT cyclin D2 hs
HUGENEFL:D13639_AT cyclin D2 hs
U133_X3P:G4502616_3P_A_AT cyclin D2 hs
U133_X3P:HS.75586.0.A3_3P_A_AT cyclin D2 hs
U133_X3P:HS.75586.0.A1_3P_A_AT cyclin D2 hs
HG-U95AV2:36650_AT cyclin D2 hs
HG-U95E:73313_AT cyclin D2 hs
HG-U95E:73316_AT cyclin D2 hs
HG-U95D:84881_AT cyclin D2 hs
U133_X3P:HS2.376071.1.S1_3P_AT Cyclin D2 hs
HG-U133_PLUS_2:1565735_AT Cyclin D2 hs
HG-U133_PLUS_2:1565734_AT Cyclin D2 hs
HG-U133_PLUS_2:231259_S_AT Cyclin D2 hs
HG-U133B:231259_S_AT Cyclin D2 hs
U133_X3P:HS.75586.1.A1_3P_AT Cyclin D2 hs
MOE430A:1455956_X_AT cyclin D2 mm
MOUSE430A_2:1455956_X_AT cyclin D2 mm
MOUSE430_2:1455956_X_AT cyclin D2 mm
MU11KSUBA:M83749_S_AT cyclin D2 mm
MU11KSUBB:MSA.17902.0_S_AT cyclin D2 mm
MU11KSUBB:MSA.15616.0_S_AT cyclin D2 mm
MU11KSUBB:MSA.25099.0_S_AT cyclin D2 mm
MG-U74AV2:97504_AT cyclin D2 mm
MOE430A:1434745_AT cyclin D2 mm
MOUSE430A_2:1434745_AT cyclin D2 mm
MOUSE430_2:1434745_AT cyclin D2 mm
MOE430A:1430127_A_AT cyclin D2 mm
MOUSE430A_2:1430127_A_AT cyclin D2 mm
MOUSE430_2:1430127_A_AT cyclin D2 mm
MOE430A:1416122_AT cyclin D2 mm
MOUSE430A_2:1416122_AT cyclin D2 mm
MOUSE430_2:1416122_AT cyclin D2 mm
MOE430A:1448229_S_AT cyclin D2 mm
MOUSE430A_2:1448229_S_AT cyclin D2 mm
MOUSE430_2:1448229_S_AT cyclin D2 mm
MOE430A:1416123_AT cyclin D2 mm
MOUSE430A_2:1416123_AT cyclin D2 mm
MOUSE430_2:1416123_AT cyclin D2 mm
MOE430A:1416124_AT cyclin D2 mm
MOUSE430A_2:1416124_AT cyclin D2 mm
MOUSE430_2:1416124_AT cyclin D2 mm
MU19KSUBA:TC14569_F_AT Cyclin D2 (Ccnd2), mRNA mm
MU19KSUBA:TC15584_AT Cyclin D2 (Ccnd2), mRNA mm
MU19KSUBA:TC20139_AT Cyclin D2 (Ccnd2), mRNA mm
MU19KSUBA:TC20139_G_AT Cyclin D2 (Ccnd2), mRNA mm
MU19KSUBB:TC30362_AT Cyclin D2 (Ccnd2), mRNA mm
RT-U34:D16308_AT cyclin D2 rn
RG-U34A:D16308_AT cyclin D2 rn
RG-U34A:RC_AA899106_AT cyclin D2 rn
RAE230A:1370810_AT cyclin D2 rn
RAT230_2:1370810_AT cyclin D2 rn
RAE230B:1392374_AT Cyclin D2 rn
RAT230_2:1392374_AT Cyclin D2 rn
Protein Similarities
Method ID Description E-Value
blast CAA21630 Hypothetical protein Y38F1A.5 [Caenorhabditis elegans] ref|NP_496763.1| Y38F1A.5 [Caenorhabditis elegans] 0.0
blast AAC35273 cyclin D [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006671 EMBL-EBI Cyclin, N-terminal domain 2.9E-39
Sequence
Target Sequence 
>C. ELEGANS:188351_S_AT
gaggggcgactttcagacagttgtgcagaagtgccaaaaaatgcacaaacttgccacctt
attcccatccatgcaatgtgcaattggcctctactacgtatcgaatctcccaacacagaa
taaggagctggcagtaaagatcaaggatctcttggcaaacatgttccagttggaagtgaa
ccttctcgactcgtacatcccgatggtgcagcgttgcatgagcacaacgccaatctacac
atcagaagatgctgagaagacggaaccgacaccatccgcgccggcctccactcaagagcc
agaggccttccaagagctcaaggagctcaaggaagaacccctcccaactccaccaccaga
ggaacctgccttccagaagcttgtgctcctcgagccgatccccctctccgagcaaactcc
atcaactcccctcaacgactcgggcttctcgtctgatgtctccagccccgcatcctcaga
gaagaagcgtcgtcggagcacagactggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGGGCGACTTTCAGACAGTTGTG 5 401 678 Antisense
CCTTATTCCCATCCATGCAATGTGC 377 269 734 Antisense
ATTGGCCTCTACTACGTATCGAATC 605 3 760 Antisense
CGTATCGAATCTCCCAACACAGAAT 329 247 774 Antisense
GGATCTCTTGGCAAACATGTTCCAG 188 513 822 Antisense
CTCGTACATCCCGATGGTGCAGCGT 360 233 867 Antisense
GCATGAGCACAACGCCAATCTACAC 21 311 893 Antisense
AGAGCCAGAGGCCTTCCAAGAGCTC 71 71 972 Antisense
AACCTGCCTTCCAGAAGCTTGTGCT 347 147 1040 Antisense
GCATCCTCAGAGAAGAAGCGTCGTC 661 309 1147 Antisense
AAGCGTCGTCGGAGCACAGACTGGT 141 149 1162 Antisense
Sequence Source Affymetrix Proprietary Database