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[188349_s_at]

Description C34D4.15_rc /REP_DB=WormBase Gene ID /WP=CE17509 /TR=Q18450 /GB=AAB00702.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /REVCOMP
Cluster 6grp_total > 26      4grp_total > 42      6grp_cgc > 04      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 5.6
(-3)
A 		21.1
(3)
A 		11.3
(-0.8)
A 		9.2
(-1.6)
A 		16
B 4.3
(-3)
A 		20.8
(3)
A 		5.6
(-2.5)
A 		9.1
(-1.3)
A 		17
C 10.5
(-0.7)
A 		8
(-3)
A 		14.4
(3)
A 		8.5
(-2.5)
A 		6
avr 6.8
(-3) 		16.6
(3) 		10.4
(-0.8) 		8.9
(-1.7) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 15.9
(2.1)
A 		18.3
(3)
A 		9.2
(-0.5)
A 		10.5
(-0)
A 		10.9
(0.1)
A 		2.8
(-3)
A 		16
B 12.4
(3)
A 		11.8
(2.5)
A 		7.3
(-1.1)
A 		5
(-3)
A 		11.7
(2.4)
A 		9.2
(0.4)
A 		7
C 7.1
(-0.3)
A 		4.9
(-1.8)
A 		3.2
(-3)
A 		5.3
(-1.6)
A 		3.2
(-3)
A 		12
(3)
A 		9
avr 11.8
(3) 		11.7
(2.9) 		6.6
(-3) 		6.9
(-2.7) 		8.6
(-0.7) 		8
(-1.4) 		5
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 2
(-1.7)
A 		4.6
(3)
A 		3
(0.1)
A 		1.3
(-3)
A 		3
B 1.4
(-2.8)
A 		5.1
(3)
A 		1.3
(-3)
A 		1.9
(-2.1)
A 		4
C 3.5
(0.5)
A 		2.3
(-1.5)
A 		5
(3)
A 		1.4
(-3)
A 		4
avr 2.3
(-1.1) 		4
(3) 		3.1
(0.8) 		1.5
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 2.9
(-0.7)
A 		6.5
(3)
A 		2
(-1.7)
A 		2.7
(-0.9)
A 		3.3
(-0.3)
A 		0.7
(-3)
A 		6
B 4.3
(2.1)
A 		3.9
(1.5)
A 		1.8
(-2.1)
A 		1.3
(-3)
A 		4.8
(3)
A 		3.4
(0.6)
A 		4
C 2.6
(0.4)
A 		1.5
(-1.7)
A 		0.8
(-3)
A 		1.1
(-2.4)
A 		1
(-2.6)
A 		4
(3)
A 		3
avr 3.3
(1.3) 		4
(3) 		1.5
(-3) 		1.7
(-2.5) 		3
(0.6) 		2.7
(-0.1) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188349_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28141
Sequence Type Exemplar sequence
Representative Public ID C34D4.15 NCBI
Target Description C34D4.15_rc /REP_DB=WormBase Gene ID /WP=CE17509 /TR=Q18450 /GB=AAB00702.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /REVCOMP
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) C34D4.15
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C34D4.15 C34D4.15_rc /REP_DB=WormBase Gene ID /WP=CE17509 /TR=Q18450 /GB=AAB00702.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /REVCOMP A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_068722 11/11 Negative Strand Matching Probes A 
SNAP00000003805 11/11 Negative Strand Matching Probes None
GENEFINDER00000003812 11/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7150682-7152479(+) 100.0 100.0
Public Domain and Genome References
Ensembl C34D4.15
Sequence
Target Sequence 
>C. ELEGANS:188349_S_AT
tccaagttttccaggcttccctggttcaccaggaattccttgttgtcctggatatccttc
acgtccatgttctccaattcttcctgggtttcctggtggtccttctggtccagatggccc
agtttctccaggtggtccagttggtccacgtggtccgttcgggcacactctgcatccttt
cgttggatcaatggtcacgggtggagcgattccagcaagtcccggagctccaggttctcc
agattttccaggttctccgtcaagtcccggctttccagcagctccagcttgtccagcagg
gcatccattattctgattacaactacaagtacttgctccctcaacaaatgcatcttcttt
cacataagccgtgtgcaatggatatgtcttttttggtgaatcaccataagcctgacgttt
tcctcttctcattgtgatcaactctctccaagtataatcagccattgctcgaaactcttc
actatcaactttcagttgatcattgatattttgaatcttggttaccaatgatggtacgta
cacgaggcagacaagaattgcaccgcctgagaatacgcatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCAAGTTTTCCAGGCTTCCCTGGT 69 587 442 Antisense
GAATTCCTTGTTGTCCTGGATATCC 412 323 474 Antisense
TGGTCCTTCTGGTCCAGATGGCCCA 79 553 538 Antisense
CAGGTGGTCCAGTTGGTCCACGTGG 551 203 570 Antisense
ACTCTGCATCCTTTCGTTGGATCAA 56 101 608 Antisense
TGTCCAGCAGGGCATCCATTATTCT 497 557 731 Antisense
ATGCATCTTCTTTCACATAAGCCGT 471 43 789 Antisense
ATCACCATAAGCCTGACGTTTTCCT 577 25 841 Antisense
CTCATTGTGATCAACTCTCTCCAAG 428 229 869 Antisense
CCATTGCTCGAAACTCTTCACTATC 668 269 903 Antisense
ATTGCACCGCCTGAGAATACGCATG 667 5 998 Antisense
Sequence Source Affymetrix Proprietary Database