[Home] | [Total List]

[188347_at] EF hand

Description C54E10.2 /REP_DB=WormBase Gene ID /WP=CE15731 /TR=O45313 /GB=CAB03995.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=EF hand
Cluster 6grp_total > 15      4grp_total > 46      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 135
1 2 3 4 range
A 125.2
(1.5)
P 		159.5
(3)
A 		74
(-0.8)
A 		24.4
(-3)
A 		135
B 150.7
(3)
P 		90
(-0.8)
A 		55.7
(-3)
A 		98.9
(-0.3)
A 		95
C 119.3
(3)
P 		40.3
(-3)
A 		59
(-1.6)
A 		104.2
(1.9)
A 		79
avr 131.7
(3) 		96.6
(-0.1) 		62.9
(-3) 		75.8
(-1.9) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 122
1 2 3 4 5 6 range
A 119.6
(3)
M 		95.2
(1.1)
P 		114.1
(2.6)
A 		74.4
(-0.5)
A 		116.9
(2.8)
A 		43
(-3)
A 		77
B 157.3
(3)
P 		101.7
(0.3)
P 		93.4
(-0.1)
A 		82.2
(-0.7)
A 		34.9
(-3)
A 		58.6
(-1.8)
A 		122
C 123.3
(1)
P 		154.2
(3)
P 		62.2
(-3)
A 		82.7
(-1.7)
A 		71.4
(-2.4)
P 		71.1
(-2.4)
P 		92
avr 133.4
(3) 		117
(1.7) 		89.9
(-0.4) 		79.8
(-1.2) 		74.4
(-1.7) 		57.6
(-3) 		76
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 45.6
(3)
P 		34.6
(1.4)
A 		19.4
(-0.7)
A 		3.6
(-3)
A 		42
B 48.1
(3)
P 		22.2
(-1.4)
A 		12.9
(-3)
A 		21.1
(-1.6)
A 		35
C 39.5
(3)
P 		11.6
(-3)
A 		20.6
(-1.1)
A 		17.6
(-1.7)
A 		28
avr 44.4
(3) 		22.8
(-1.3) 		17.6
(-2.3) 		14.1
(-3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 22
(-0.2)
M 		33.8
(2.6)
P 		24.9
(0.5)
A 		18.9
(-1)
A 		35.3
(3)
A 		10.5
(-3)
A 		25
B 54.7
(3)
P 		33.9
(-0.1)
P 		22.7
(-1.7)
A 		21.8
(-1.9)
A 		14.2
(-3)
A 		21.9
(-1.9)
A 		41
C 45.7
(2.7)
P 		47.1
(3)
P 		15.8
(-3)
A 		16.6
(-2.8)
A 		23.1
(-1.6)
P 		23.8
(-1.5)
P 		31
avr 40.8
(3) 		38.3
(2.3) 		21.1
(-2.3) 		19.1
(-2.9) 		24.2
(-1.5) 		18.7
(-3) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188347_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12960
Sequence Type Exemplar sequence
Representative Public ID C54E10.2 NCBI
Target Description C54E10.2 /REP_DB=WormBase Gene ID /WP=CE15731 /TR=O45313 /GB=CAB03995.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=EF hand
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075277(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075277 NCBI Caenorhabditis elegans C54E10.2 (C54E10.2) mRNA, complete cds. 9/11 None
GENEFINDER00000040262 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18829420:18833878:1 11/11 None
C54E10.2 ENSEMBL cdna:known chromosome:CEL140:V:18829420:18833861:1 gene:C54E10.2 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18829419-18833861(+) 98.07 100.0
Public Domain and Genome References
Gene Title EF hand
Ensembl C54E10.2
Entrez Gene 183792 Entrez gene
SwissProt O45313 EMBL-EBI
WormBase CE34776 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03995 Hypothetical protein C54E10.2 [Caenorhabditis elegans] ref|NP_507678.2| C54E10.2 [Caenorhabditis elegans] 1.0E-167
blast CAB03995 Hypothetical protein C54E10.2 [Caenorhabditis elegans] ref|NP_507678.2| C54E10.2 [Caenorhabditis elegans] 1.0E-150
blast CAE61745 Hypothetical protein CBG05699 [Caenorhabditis briggsae] 3.0E-38
blast NP_001029177 A-type potassium channel modulatory protein 2 [Rattus norvegicus] dbj|BAA92744.1| A-type potassium channel modulatory protein 2b [Rattus norvegicus] 7.0E-17
blast NP_001029177 A-type potassium channel modulatory protein 2 [Rattus norvegicus] dbj|BAA92744.1| A-type potassium channel modulatory protein 2b [Rattus norvegicus] 6.0E-16
Protein Domains
Database ID Description E-Value
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 5.9E-5
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 4.4E-5
Sequence
Target Sequence 
>C. ELEGANS:188347_AT
agaagaattccgaaacctgctcgcctcaataattgcaccggaaaaagccacggatcagta
tatttcaaggctttttacggcgttcgccggggtcgacaagaagactatcacttttgagaa
ccttctagacagcctttcccatgtacagcctcagaccgccgagactaatgccaaatggac
aatgagattgataactgggggtggagaaggcgattgttttggatattcagcttttttgga
ctttacccagtcagtattccagttgaatgaaggaaaaagcggaggtgaagaaatcaataa
ggagtccgtccagcaaagagccacaaaaatattcgccgaactggattgtgatagggatgg
attagtgacctatgacgatatgatccggttctttcaggccgtttcaggccgtttcaagaa
gcccgaaatacaaattttgcgaaacccagtcgatatgggtgtcaaattaacggaaatttt
acaaggatttcaaattttcaactcatttttgtttcagaaaaacaacgattcaagcatcgg
cttcactcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAAGAATTCCGAAACCTGCTCGCC 338 71 402 Antisense
TGCTCGCCTCAATAATTGCACCGGA 683 581 419 Antisense
TCAAGGCTTTTTACGGCGTTCGCCG 205 633 466 Antisense
TGAGAACCTTCTAGACAGCCTTTCC 120 569 516 Antisense
TCAGACCGCCGAGACTAATGCCAAA 525 623 552 Antisense
GATATTCAGCTTTTTTGGACTTTAC 323 427 623 Antisense
ACTTTACCCAGTCAGTATTCCAGTT 322 99 641 Antisense
GTCCGTCCAGCAAAGAGCCACAAAA 646 475 705 Antisense
TATGATCCGGTTCTTTCAGGCCGTT 421 651 780 Antisense
TCAGGCCGTTTCAGGCCGTTTCAAG 408 235 795 Antisense
ACGATTCAAGCATCGGCTTCACTCC 354 91 926 Antisense
Sequence Source Affymetrix Proprietary Database