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[188346_at]

Description F16G10.1_rc /REP_DB=WormBase Gene ID /WP=CE19390 /TR=O76599 /GB=AAC26282.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /REVCOMP
Cluster 6grp_total > 63      4grp_total > 0      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 10.8
(-3)
A 		17.6
(-2.5)
A 		69.7
(1.6)
A 		87.3
(3)
P 		77
B 20.2
(-3)
A 		32.9
(0.3)
A 		43.5
(3)
A 		27.8
(-1)
A 		23
C 36
(-1)
A 		12.6
(-2.6)
A 		7.3
(-3)
A 		92.8
(3)
P 		86
avr 22.3
(-2.8) 		21
(-3) 		40.2
(-0.6) 		69.3
(3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 11.8
(-2.1)
A 		23.7
(-0.9)
A 		63.1
(3)
P 		2.3
(-3)
A 		12.9
(-2)
A 		27.9
(-0.5)
A 		61
B 19.7
(0.1)
A 		31.5
(3)
A 		7.3
(-3)
A 		28.6
(2.3)
A 		23.5
(1)
A 		19.7
(0.1)
A 		24
C 17.9
(-3)
A 		37.6
(-0.5)
A 		28.2
(-1.7)
A 		66.1
(3)
A 		33.9
(-1)
A 		27.1
(-1.9)
A 		48
avr 16.5
(-3) 		30.9
(2.3) 		32.9
(3) 		32.3
(2.8) 		23.4
(-0.5) 		24.9
(0.1) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 3.9
(-3)
A 		3.8
(-3)
A 		18.2
(3)
A 		12.8
(0.8)
P 		14
B 6.4
(-2.3)
A 		8.1
(0.1)
A 		10.1
(3)
A 		5.9
(-3)
A 		4
C 11.9
(1.3)
A 		3.6
(-2.5)
A 		2.5
(-3)
A 		15.6
(3)
P 		13
avr 7.4
(-0.9) 		5.2
(-3) 		10.3
(1.9) 		11.4
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 2.2
(-2.3)
A 		8.4
(0.6)
A 		13.7
(3)
P 		0.6
(-3)
A 		3.9
(-1.5)
A 		6.8
(-0.2)
A 		13
B 6.9
(0.5)
A 		10.5
(3)
A 		1.8
(-3)
A 		7.6
(1)
A 		9.5
(2.3)
A 		7.3
(0.8)
A 		9
C 6.7
(-3)
A 		11.5
(1.4)
A 		7.2
(-2.5)
A 		13.3
(3)
A 		11
(0.9)
A 		9.1
(-0.8)
A 		7
avr 5.3
(-3) 		10.1
(3) 		7.6
(-0.1) 		7.2
(-0.6) 		8.1
(0.5) 		7.7
(0) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188346_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28119
Sequence Type Exemplar sequence
Representative Public ID F16G10.1 NCBI
Target Description F16G10.1_rc /REP_DB=WormBase Gene ID /WP=CE19390 /TR=O76599 /GB=AAC26282.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /REVCOMP
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) F16G10.1
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F16G10.1 F16G10.1_rc /REP_DB=WormBase Gene ID /WP=CE19390 /TR=O76599 /GB=AAC26282.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /REVCOMP A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_061867 11/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2401174-2404659(-) 100.0 100.0
Public Domain and Genome References
Ensembl F16G10.1
Sequence
Target Sequence 
>C. ELEGANS:188346_AT
tttaatgaaccatctgcacccacaagagagaaaccaatagcaattccacgtggatatatc
gaggccatcaatttattgttttcacaaaagagaccaaagtaatcaattactgtccggaca
cccaaatctgctaccgacgatggtggctgggctccaaatgtaggtactccaggtactgca
acgtctgtcagttcgctttcttcaaaaacgccaataataaacggcaacaagccaggggga
caagagaaaacagcgcatccacccatctctccgaccatcattggagccttaaccactgtt
gataaatctggacacttggttgtagatgttgggcatacttctcctgaaattagctcaggc
gcctcggtttcctcggaggtctctggtgtagacatatctccaggagccattgtgctcatt
tcaggagcctctgtgttctctccagaagccatcgtggtttctctaggagccattgtactt
tcttcaggagcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTAATGAACCATCTGCACCCACAA 161 673 50 Antisense
GTAATCAATTACTGTCCGGACACCC 459 461 148 Antisense
ACCCAAATCTGCTACCGACGATGGT 30 89 169 Antisense
GCTGGGCTCCAAATGTAGGTACTCC 236 295 195 Antisense
GTACTCCAGGTACTGCAACGTCTGT 468 457 213 Antisense
TCTGTCAGTTCGCTTTCTTCAAAAA 211 609 233 Antisense
ATCTCTCCGACCATCATTGGAGCCT 253 31 314 Antisense
GATGTTGGGCATACTTCTCCTGAAA 661 409 374 Antisense
TTTCCTCGGAGGTCTCTGGTGTAGA 430 669 417 Antisense
GAAGCCATCGTGGTTTCTCTAGGAG 420 345 494 Antisense
AGCCATTGTACTTTCTTCAGGAGCC 93 83 517 Antisense
Sequence Source Affymetrix Proprietary Database