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[188344_at]

Description Y116A8B.4_rc /REP_DB=WormBase Gene ID /WP=CE16681 /TR=O62402 /GB=CAA16289.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /REVCOMP
Cluster 6grp_total > 53      4grp_total > 03      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 108
1 2 3 4 range
A 2.8
(-2.9)
A 		1.2
(-3)
A 		2.2
(-2.9)
A 		76.4
(3)
A 		75
B 23.1
(2.8)
A 		2.1
(-3)
A 		2.7
(-2.8)
A 		23.8
(3)
A 		22
C 2.1
(-2.9)
A 		5.4
(-2.8)
A 		1.1
(-3)
A 		108.7
(3)
A 		108
avr 9.3
(-2.4) 		2.9
(-2.9) 		2
(-3) 		69.6
(3) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 2.4
(-2.7)
A 		2.1
(-2.8)
A 		27.6
(3)
A 		1.8
(-2.9)
A 		4.4
(-2.3)
A 		1.2
(-3)
A 		26
B 1.2
(-3)
A 		1.7
(-1.5)
A 		1.8
(-1.2)
A 		2.2
(0)
A 		3.2
(3)
A 		1.5
(-2.1)
A 		2
C 1.5
(-2.5)
A 		6.8
(3)
A 		1.5
(-2.5)
A 		1.6
(-2.4)
A 		1
(-3)
A 		1.2
(-2.8)
A 		6
avr 1.7
(-2.7) 		3.5
(-1.5) 		10.3
(3) 		1.9
(-2.6) 		2.9
(-1.9) 		1.3
(-3) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 1
(-2.6)
A 		0.3
(-3)
A 		0.6
(-2.8)
A 		11.2
(3)
A 		11
B 7.4
(3)
A 		0.5
(-3)
A 		0.6
(-2.9)
A 		5.1
(1)
A 		7
C 0.7
(-2.9)
A 		1.6
(-2.6)
A 		0.4
(-3)
A 		18.3
(3)
A 		18
avr 3
(-1.6) 		0.8
(-2.8) 		0.5
(-3) 		11.5
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 0.4
(-2.9)
A 		0.8
(-2.5)
A 		6
(3)
A 		0.5
(-2.8)
A 		1.3
(-1.9)
A 		0.3
(-3)
A 		6
B 0.4
(-3)
A 		0.6
(-1.7)
A 		0.4
(-3)
A 		0.6
(-1.7)
A 		1.3
(3)
A 		0.6
(-1.7)
A 		1
C 0.5
(-2.3)
A 		2.1
(3)
A 		0.4
(-2.7)
A 		0.3
(-3)
A 		0.3
(-3)
A 		0.4
(-2.7)
A 		2
avr 0.4
(-3) 		1.2
(-0.5) 		2.3
(3) 		0.5
(-2.7) 		1
(-1.1) 		0.4
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188344_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28134
Sequence Type Exemplar sequence
Representative Public ID Y116A8B.4 NCBI
Target Description Y116A8B.4_rc /REP_DB=WormBase Gene ID /WP=CE16681 /TR=O62402 /GB=CAA16289.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /REVCOMP
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y116A8B.4
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y116A8B.4 Y116A8B.4_rc /REP_DB=WormBase Gene ID /WP=CE16681 /TR=O62402 /GB=CAA16289.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /REVCOMP A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_070654 11/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:17222783-17225093(-) 94.74 100.0
Public Domain and Genome References
Ensembl Y116A8B.4
Sequence
Target Sequence 
>C. ELEGANS:188344_AT
attacgatttcagcaattcccaaattttcagtttggtttttaatcatttttgaaacgtta
ttaagacgtgagaaagtaatggaaagattaaatttccaactcaaaaaaggttttaaaaat
gaaaaggtgagtggtttgagtgatactgaaaaatagagaaggaggtgaaaaagagactgt
gtaaacagaaaaaggggtgaaaaagagaacgacgggagtaaaagacaaacataaaactga
ataaaaaatatggaaaagtaaacataaaaatacatcaaatgaatacattcgatcaattcg
gtaggcgtatgcgcacattccgcgcactttccgagcggtttaatacatttgtttttaata
cgatcggaaagtgcgcggaatctgctcagaatgtgcgcggaatgtgcgcataatgcaggg
cagctagaaaatgaggaacaccaaaacgcaatgtgcgcggaatgtgcgcatgatgcagag
tggttgtgtttcactgcctttcgcttgcagtgtattttga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTACGATTTCAGCAATTCCCAAAT 360 13 317 Antisense
TACATTCGATCAATTCGGTAGGCGT 568 643 600 Antisense
TCGGTAGGCGTATGCGCACATTCCG 414 605 614 Antisense
CGCGCACTTTCCGAGCGGTTTAATA 26 257 637 Antisense
GAAAGTGCGCGGAATCTGCTCAGAA 190 361 683 Antisense
ATCTGCTCAGAATGTGCGCGGAATG 583 33 696 Antisense
GTGCGCATAATGCAGGGCAGCTAGA 287 479 720 Antisense
GGAACACCAAAACGCAATGTGCGCG 377 529 751 Antisense
GCGGAATGTGCGCATGATGCAGAGT 113 293 773 Antisense
AGAGTGGTTGTGTTTCACTGCCTTT 413 67 793 Antisense
GCCTTTCGCTTGCAGTGTATTTTGA 321 281 812 Antisense
Sequence Source Affymetrix Proprietary Database