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[188341_at] 7TM chemoreceptor, str family

Description R08C7.7 /REP_DB=WormBase Gene ID /WP=CE12570 /GEN=str-185 /TR=Q21838 /GB=AAC48081.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 87      4grp_total > 18      6grp_cgc > 58      6grp_cgc_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 136
1 2 3 4 range
A 35.9
(-3)
A 		50
(-1.9)
A 		40.7
(-2.6)
A 		112.8
(3)
A 		77
B 30.8
(-3)
A 		69.4
(-0.9)
A 		36.8
(-2.7)
A 		139.7
(3)
A 		109
C 20.5
(-3)
A 		45.6
(-1.9)
A 		37.8
(-2.2)
A 		156.1
(3)
A 		136
avr 29.1
(-3) 		55
(-1.5) 		38.4
(-2.5) 		136.2
(3) 		107

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 31
(1.1)
A 		13.8
(-1.9)
A 		30.9
(1)
A 		34.4
(1.6)
A 		42.4
(3)
A 		7.2
(-3)
A 		35
B 20.1
(-2.1)
A 		21.2
(-2.1)
A 		52.3
(0.3)
A 		8.5
(-3)
A 		35.8
(-1)
A 		89.3
(3)
A 		81
C 31.1
(-1.1)
A 		56.2
(2.5)
A 		18
(-3)
A 		59.3
(3)
A 		40.5
(0.3)
A 		48.1
(1.4)
A 		41
avr 27.4
(-3) 		30.4
(-2.1) 		33.7
(-1.2) 		34.1
(-1.1) 		39.6
(0.5) 		48.2
(3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 13.1
(-0.5)
A 		10.9
(-2.7)
A 		10.6
(-3)
A 		16.5
(3)
A 		6
B 9.8
(-2.6)
A 		17.1
(-0.6)
A 		8.5
(-3)
A 		29.8
(3)
A 		21
C 6.8
(-3)
A 		13.1
(-1.1)
A 		13.2
(-1)
A 		26.3
(3)
A 		20
avr 9.9
(-3) 		13.7
(-1.4) 		10.8
(-2.6) 		24.2
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 5.7
(-0.8)
A 		4.9
(-1.3)
A 		6.7
(-0.3)
A 		8.7
(0.8)
A 		12.8
(3)
A 		1.7
(-3)
A 		11
B 7
(-2.1)
A 		7.1
(-2.1)
A 		12.7
(-1)
A 		2.3
(-3)
A 		14.5
(-0.6)
A 		33.3
(3)
A 		31
C 11.5
(0.3)
A 		17.1
(3)
A 		4.6
(-3)
A 		11.9
(0.5)
A 		13.1
(1.1)
A 		16.1
(2.5)
A 		13
avr 8.1
(-2.7) 		9.7
(-1.7) 		8
(-2.7) 		7.6
(-3) 		13.5
(0.8) 		17
(3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188341_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10759
Sequence Type Exemplar sequence
Representative Public ID R08C7.7 NCBI
Target Description R08C7.7 /REP_DB=WormBase Gene ID /WP=CE12570 /GEN=str-185 /TR=Q21838 /GB=AAC48081.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068160(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068160 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-185) (str-185) mRNA, complete cds. 11/11 None
SNAP00000031354 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4427706:4429715:-1 11/11 None
GENEFINDER00000031365 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4427706:4429649:-1 11/11 None
R08C7.7 ENSEMBL cdna:known chromosome:CEL140:IV:4427706:4429775:-1 gene:R08C7.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4427711-4429781(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-185
Ensembl R08C7.7
Entrez Gene 192025 Entrez gene
SwissProt Q21838 EMBL-EBI
WormBase CE12570 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC48081 Seven tm receptor protein 185 [Caenorhabditis elegans] ref|NP_500561.1| Seven TM Receptor family member (str-185) [Caenorhabditis elegans] 0.0
blast CAE58526 Hypothetical protein CBG01681 [Caenorhabditis briggsae] 0.0
blast CAE58526 Hypothetical protein CBG01681 [Caenorhabditis briggsae] 1.0E-173
blast AAC48081 Seven tm receptor protein 185 [Caenorhabditis elegans] ref|NP_500561.1| Seven TM Receptor family member (str-185) [Caenorhabditis elegans] 1.0E-169
blast CAE58526 Hypothetical protein CBG01681 [Caenorhabditis briggsae] 1.0E-153
blast CAE57397 Hypothetical protein CBG00349 [Caenorhabditis briggsae] 3.0E-84
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 3.3E-37
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 2.4E-34
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 8.7E-16
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500561.1 6 13-35,93-115,136-158,203-225,254-276,281-303
R08C7.7 6 13-35,93-115,136-158,203-225,254-276,281-303
SNAP00000031354 6 21-43,73-95,116-138,183-205,234-256,261-283
GENEFINDER00000031365 5 51-73,94-116,179-201,242-264,269-291
Sequence
Target Sequence 
>C. ELEGANS:188341_AT
gtggtctgtcctttgttatttgtactttcatttcgatgattcgacggatgattatatgag
aaaaacgatatttgacgggtatgacactaagattgaggacacctcctacatcattgtcct
cttccaccctgttgataaaaatggaacttctcatccggatccggcggtttttgcctcgat
cgcttgtatgtggttcatgattctaagctcagtgttctcggtattcttcttcggaatcaa
atgctattttcgtataactgaagcgctttcaagaacatgcaacgtgtcgagtgtcactaa
gggattacagcaacagctttttcaggcacttgttgttcagactttcatccccctgatcct
catgtacatccccatcgcaatcctcttcacatttccgatgattgctgtggatattggatt
tgcgagcagcttcgttgcgatgacaattgcagtttatccagccattgatcccctgccaaa
catgtttattataaaaaattatcgaaaagcagtttttgcctttttctctgccatttttcg
caatccgtgtgggtcaatccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGTCTGTCCTTTGTTATTTGTAC 478 489 456 Antisense
GATTGAGGACACCTCCTACATCATT 600 433 546 Antisense
TCCTCTTCCACCCTGTTGATAAAAA 455 593 572 Antisense
TTTGCCTCGATCGCTTGTATGTGGT 664 667 625 Antisense
TCAGTGTTCTCGGTATTCTTCTTCG 646 623 664 Antisense
ATCCTCTTCACATTTCCGATGATTG 330 39 835 Antisense
GATTTGCGAGCAGCTTCGTTGCGAT 271 427 872 Antisense
TGCAGTTTATCCAGCCATTGATCCC 560 577 903 Antisense
TTGATCCCCTGCCAAACATGTTTAT 467 703 920 Antisense
TTTTTCTCTGCCATTTTTCGCAATC 515 675 976 Antisense
TTCGCAATCCGTGTGGGTCAATCCG 515 695 992 Antisense
Sequence Source Affymetrix Proprietary Database