[Home] | [Total List]

[188340_at] 7TM chemoreceptor, str family

Description T19H12.7 /REP_DB=WormBase Gene ID /WP=CE13764 /GEN=str-32 /TR=O01611 /GB=AAC69035.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 12      6grp_cgc > 0      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 15.1
(-2.4)
A 		29.2
(-1.2)
A 		7.8
(-3)
A 		78.8
(3)
A 		71
B 58.7
(3)
A 		9.9
(-3)
A 		37.5
(0.4)
A 		26
(-1)
A 		49
C 30.7
(-1.7)
A 		45.8
(-0.6)
A 		11.4
(-3)
A 		97.8
(3)
A 		86
avr 34.8
(-1) 		28.3
(-1.8) 		18.9
(-3) 		67.5
(3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 54.2
(3)
A 		17.3
(-1.8)
A 		37.4
(0.8)
A 		10.3
(-2.8)
A 		13.7
(-2.3)
A 		8.5
(-3)
A 		46
B 51.1
(3)
A 		6.7
(-3)
A 		6.8
(-3)
A 		29.8
(0.1)
A 		12.6
(-2.2)
A 		39.6
(1.4)
A 		44
C 30.4
(-0.8)
A 		10.7
(-2.8)
A 		10
(-2.8)
A 		67.9
(3)
A 		8.5
(-3)
A 		25.3
(-1.3)
A 		59
avr 45.2
(3) 		11.6
(-3) 		18.1
(-1.8) 		36
(1.4) 		11.6
(-3) 		24.5
(-0.7) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 5.5
(-0.8)
A 		6.3
(-0.3)
A 		2.1
(-3)
A 		11.5
(3)
A 		9
B 18.7
(3)
A 		2.4
(-3)
A 		8.7
(-0.7)
A 		5.5
(-1.9)
A 		16
C 10.2
(-0)
A 		13.2
(1.4)
A 		4
(-3)
A 		16.5
(3)
A 		13
avr 11.5
(3) 		7.3
(-0.8) 		4.9
(-3) 		11.2
(2.7) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 10
(3)
A 		6.1
(0)
A 		8.1
(1.6)
A 		2.6
(-2.6)
A 		4.1
(-1.5)
A 		2.1
(-3)
A 		8
B 17.8
(3)
A 		2.2
(-2.8)
A 		1.6
(-3)
A 		7.9
(-0.7)
A 		5.1
(-1.7)
A 		14.8
(1.9)
A 		16
C 11.3
(1.7)
A 		3.3
(-2.6)
A 		2.5
(-3)
A 		13.7
(3)
A 		2.7
(-2.9)
A 		8.5
(0.2)
A 		11
avr 13
(3) 		3.9
(-3) 		4.1
(-2.9) 		8.1
(-0.2) 		4
(-2.9) 		8.5
(0) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188340_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15667
Sequence Type Exemplar sequence
Representative Public ID T19H12.7 NCBI
Target Description T19H12.7 /REP_DB=WormBase Gene ID /WP=CE13764 /GEN=str-32 /TR=O01611 /GB=AAC69035.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071905(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071905 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-32) (str-32) mRNA, complete cds. 11/11 None
SNAP00000027977 ENSEMBL cdna:SNAP chromosome:CEL140:V:4879759:4881291:-1 11/11 None
GENEFINDER00000027984 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4878768:4881291:-1 10/11 None
T19H12.7 ENSEMBL cdna:known chromosome:CEL140:V:4879759:4881291:-1 gene:T19H12.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4879758-4881291(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-32
Ensembl T19H12.7
Entrez Gene 191973 Entrez gene
SwissProt O01611 EMBL-EBI
WormBase CE13764 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC69035 Seven tm receptor protein 32 [Caenorhabditis elegans] ref|NP_504306.1| Seven TM Receptor family member (str-32) [Caenorhabditis elegans] 0.0
blast AAC19252 Seven tm receptor protein 33 [Caenorhabditis elegans] ref|NP_503741.1| Seven TM Receptor family member (str-33) [Caenorhabditis elegans] 2.0E-70
blast AAC19252 Seven tm receptor protein 33 [Caenorhabditis elegans] ref|NP_503741.1| Seven TM Receptor family member (str-33) [Caenorhabditis elegans] 3.0E-70
blast CAE66305 Hypothetical protein CBG11555 [Caenorhabditis briggsae] 2.0E-69
blast CAB04822 Hypothetical protein T23D5.2 [Caenorhabditis elegans] emb|CAA15973.2| Hypothetical protein T23D5.2 [Caenorhabditis elegans] ref|NP_506916.2| Seven TM Receptor family member (str-38) [Caenorhabditis elegans] 4.0E-69
Protein Domains
Database ID Description E-Value
Pfam IPR007026 EMBL-EBI CC domain 2.0E-14
Pfam IPR007026 EMBL-EBI CC domain 1.0E-16
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504306.1 7 15-34,47-69,92-114,134-156,199-221,249-271,281-303
T19H12.7 7 15-34,47-69,92-114,134-156,199-221,249-271,281-303
SNAP00000027977 7 15-34,47-69,89-111,123-145,189-211,239-261,271-293
GENEFINDER00000027984 7 15-34,47-69,92-114,134-156,199-221,249-271,281-303
Sequence
Target Sequence 
>C. ELEGANS:188340_AT
ggaggtgtgtcgtatggttcttatacgtctttttgattggaatgggttggagcttcatga
tctatttttgtgctccgtcggaccgctattcgagaaattacatgcgagaaagtttattcg
acacgtatcaaatggatgtggagaaaacagtcggtttctttgtggttgtaaggagagaag
acaactctattcgatggcataacgttgcttttattggagggttaattttcgacttaataa
ttcaatacatcatcgtcatctactgcggcaccacaatgaactcaaaaatgcaggagaaac
tcgccagcttttcagttgctaatcgaaaacttcaggagcaacttttcaagaccctaatcc
tccaaatcaccattccctcaattatcttccacctcccatttgtaccagtcctctgtgcac
ctttattcaacttggaattcgacttcgagtcaggaatgatctactgtctttttagtcttt
atccatcaattgacagtattatattgatgtcagtcgttcaggattatcgacaagaaatca
agaaatttcagagcattccaagtgcaatttctga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGGTGTGTCGTATGGTTCTTATA 309 515 404 Antisense
GGTTCTTATACGTCTTTTTGATTGG 535 507 419 Antisense
GGGTTGGAGCTTCATGATCTATTTT 677 495 447 Antisense
CTCCGTCGGACCGCTATTCGAGAAA 279 231 476 Antisense
GACAACTCTATTCGATGGCATAACG 579 361 583 Antisense
AATACATCATCGTCATCTACTGCGG 632 171 647 Antisense
TCTACTGCGGCACCACAATGAACTC 631 613 662 Antisense
AGAAACTCGCCAGCTTTTCAGTTGC 140 73 698 Antisense
CTCTGTGCACCTTTATTCAACTTGG 608 229 814 Antisense
CTGTCTTTTTAGTCTTTATCCATCA 100 239 867 Antisense
AGAGCATTCCAAGTGCAATTTCTGA 463 69 953 Antisense
Sequence Source Affymetrix Proprietary Database